Strain Fitness in Pseudomonas putida KT2440 around PP_5261

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
6,005,744	+		PP_5260	0.43	-1.5
6,006,134	+		PP_5260	0.71	-1.3
6,006,134	+		PP_5260	0.71	-1.1
6,006,135	-		PP_5260	0.71	-0.3
6,006,135	-		PP_5260	0.71	-0.2
6,006,135	-		PP_5260	0.71	-2.4
6,006,135	-		PP_5260	0.71	-0.0
6,006,147	+		PP_5260	0.72	+0.2
6,006,209	+		PP_5260	0.77	-0.8
6,006,210	-		PP_5260	0.77	-1.5
6,006,210	-		PP_5260	0.77	+0.1
6,006,219	-		PP_5260	0.77	-0.1
6,006,219	-		PP_5260	0.77	+0.2
6,006,323	+		PP_5260	0.85	-0.1
6,006,324	-		PP_5260	0.85	-0.1
6,006,467	+				-0.6
6,006,468	-				-1.2
6,006,468	-				-2.3
6,006,530	+				-0.9
6,006,530	+				+0.9
6,006,531	-				+0.4
6,006,539	-				-1.3
6,006,583	+				+0.0
6,006,583	+				+0.1
6,006,583	+				-2.7
6,006,749	+		PP_5261	0.13	+0.4
6,006,749	+		PP_5261	0.13	-1.0
6,006,750	-		PP_5261	0.13	+0.3
6,006,752	+		PP_5261	0.13	+0.3
6,006,752	+		PP_5261	0.13	+1.2
6,006,753	-		PP_5261	0.13	-1.0
6,006,845	-		PP_5261	0.23	+0.7
6,007,060	+		PP_5261	0.46	-1.1
6,007,060	+		PP_5261	0.46	+1.1
6,007,061	-		PP_5261	0.46	-1.9
6,007,061	-		PP_5261	0.46	-0.1
6,007,061	-		PP_5261	0.46	-1.3
6,007,061	-		PP_5261	0.46	-0.5
6,007,103	-		PP_5261	0.51	-0.3
6,007,279	+		PP_5261	0.70	-0.6
6,007,279	+		PP_5261	0.70	-0.9
6,007,279	+		PP_5261	0.70	-1.1
6,007,279	+		PP_5261	0.70	+0.1
6,007,279	+		PP_5261	0.70	+0.4
6,007,279	+		PP_5261	0.70	-0.8
6,007,280	-		PP_5261	0.70	-2.5
6,007,280	-		PP_5261	0.70	+0.6
6,007,372	-		PP_5261	0.80	-1.0
6,007,431	+		PP_5261	0.86	-0.7
6,007,431	+		PP_5261	0.86	-0.3
6,007,431	+		PP_5261	0.86	+0.0
6,007,532	+				+0.7
6,007,532	+				-1.0
6,007,533	-				-0.1
6,007,603	+				+0.4
6,007,603	+				+0.2
6,007,608	-				+0.1
6,007,877	+		PP_5262	0.12	-0.1
6,007,887	+		PP_5262	0.12	-0.7
6,007,888	-		PP_5262	0.12	+0.2
6,008,228	+		PP_5262	0.37	-1.0
6,008,228	+		PP_5262	0.37	+0.7
6,008,229	-		PP_5262	0.37	-0.3
6,008,229	-		PP_5262	0.37	-0.1
6,008,345	+		PP_5262	0.45	-1.3
6,008,345	+		PP_5262	0.45	-3.4
6,008,345	+		PP_5262	0.45	+0.7
6,008,346	-		PP_5262	0.45	+1.0
6,008,346	-		PP_5262	0.45	+0.6
6,008,346	-		PP_5262	0.45	-0.1
6,008,346	-		PP_5262	0.45	-2.6
6,008,346	-		PP_5262	0.45	+1.1
6,008,346	-		PP_5262	0.45	-0.1
6,008,367	-		PP_5262	0.47	+0.7
6,008,459	+		PP_5262	0.54	+0.7
6,008,459	+		PP_5262	0.54	-0.9
6,008,459	+		PP_5262	0.54	-0.0
6,008,459	+		PP_5262	0.54	+1.1
6,008,459	+		PP_5262	0.54	-1.0
6,008,459	+		PP_5262	0.54	+0.2
6,008,460	-		PP_5262	0.54	-0.0
6,008,460	-		PP_5262	0.54	+0.3
6,008,460	-		PP_5262	0.54	-0.2
6,008,460	-		PP_5262	0.54	-0.8
6,008,460	-		PP_5262	0.54	+0.9
6,008,460	-		PP_5262	0.54	-1.0
6,008,460	-		PP_5262	0.54	-0.3
6,008,460	-		PP_5262	0.54	-1.3
6,008,460	-		PP_5262	0.54	-0.4
6,008,460	-		PP_5262	0.54	-0.8
6,008,460	-		PP_5262	0.54	-0.3