Strain Fitness in Pseudomonas putida KT2440 around PP_4772

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
5,431,792	+		PP_4771	0.59	+0.3
5,431,889	+		PP_4771	0.74	-1.8
5,432,130	+				-1.7
5,432,130	+				+0.4
5,432,131	-				-0.4
5,432,198	+				+0.8
5,432,198	+				-0.1
5,432,198	+				-0.4
5,432,199	-		PP_5713	0.10	-0.1
5,432,199	-		PP_5713	0.10	+0.7
5,432,199	-		PP_5713	0.10	-1.4
5,432,245	+		PP_5713	0.19	+0.4
5,432,245	+		PP_5713	0.19	+0.3
5,432,246	-		PP_5713	0.19	-0.5
5,432,246	-		PP_5713	0.19	+0.7
5,432,333	+		PP_5713	0.36	-2.0
5,432,404	-		PP_5713	0.50	+1.1
5,432,423	+		PP_5713	0.53	+0.1
5,432,424	-		PP_5713	0.53	-0.5
5,432,435	+		PP_5713	0.55	-0.2
5,432,435	+		PP_5713	0.55	-0.6
5,432,435	+		PP_5713	0.55	-0.1
5,432,436	-		PP_5713	0.56	+0.9
5,432,436	-		PP_5713	0.56	+0.6
5,432,436	-		PP_5713	0.56	+0.5
5,432,457	-		PP_5713	0.60	+0.6
5,432,459	+		PP_5713	0.60	-0.1
5,432,528	+		PP_5713	0.73	-1.0
5,432,529	-		PP_5713	0.74	+1.0
5,432,619	+				-1.8
5,432,619	+				-0.2
5,432,619	+				-1.0
5,432,620	-				+0.7
5,432,658	+				+1.7
5,432,658	+				+0.1
5,432,658	+				-0.5
5,432,659	-				-0.4
5,432,659	-				-0.5
5,432,796	+				+0.7
5,432,796	+				-0.3
5,432,841	+				-1.8
5,432,841	+				+0.6
5,432,842	-				+0.9
5,432,842	-				-0.0
5,433,162	+		PP_4772	0.17	+1.0
5,433,163	-		PP_4772	0.17	+0.6
5,433,163	-		PP_4772	0.17	+1.0
5,433,491	+		PP_4772	0.30	+0.1
5,433,531	+		PP_4772	0.31	-0.6
5,433,531	+		PP_4772	0.31	+0.0
5,433,532	-		PP_4772	0.32	-0.6
5,433,532	-		PP_4772	0.32	+0.8
5,433,532	-		PP_4772	0.32	+0.5
5,433,532	-		PP_4772	0.32	-0.3
5,434,093	-		PP_4772	0.54	+0.7
5,434,139	+		PP_4772	0.56	+1.0
5,434,140	-		PP_4772	0.56	+2.1
5,434,248	+		PP_4772	0.60	+1.4
5,434,474	+		PP_4772	0.69	-0.7
5,434,547	+		PP_4772	0.72	-0.1
5,434,840	+		PP_4772	0.83	+0.5
5,435,105	+				-1.2
5,435,105	+				+0.2
5,435,256	+				+0.5
5,435,289	+				+2.2
5,435,290	-				+1.1
5,435,290	-				-0.0
5,435,313	+				-0.4
5,435,313	+				-0.1
5,435,314	-				+1.0
5,435,314	-				+1.2
5,435,324	+				-0.6
5,435,324	+				+0.3
5,435,324	+				-0.4
5,435,377	+		PP_4773	0.12	-0.3
5,435,377	+		PP_4773	0.12	-0.8
5,435,378	-		PP_4773	0.13	+1.3
5,435,378	-		PP_4773	0.13	+0.7
5,435,462	-		PP_4773	0.30	-1.2
5,435,539	+		PP_4773	0.46	+2.0
5,435,539	+		PP_4773	0.46	-0.2
5,435,540	-		PP_4773	0.46	-0.4
5,435,540	-		PP_4773	0.46	-0.5
5,435,540	-		PP_4773	0.46	-0.0
5,435,593	+		PP_4773	0.57	+0.4
5,435,594	-		PP_4773	0.57	-0.0
5,435,596	+		PP_4773	0.58	-0.2
5,435,830	+				-0.3
5,435,830	+				-0.2
5,435,831	-				-0.7
5,436,014	+		PP_4774	0.22	+0.2
5,436,015	-		PP_4774	0.22	+1.0
5,436,146	+		PP_4774	0.37	+0.7
5,436,147	-		PP_4774	0.37	-0.2
5,436,147	-		PP_4774	0.37	+0.2
5,436,169	+		PP_4774	0.40	+0.2
5,436,169	+		PP_4774	0.40	-0.4
5,436,170	-		PP_4774	0.40	-1.0
5,436,170	-		PP_4774	0.40	-1.2
5,436,170	-		PP_4774	0.40	+0.6
5,436,236	+		PP_4774	0.47	+0.4
5,436,236	+		PP_4774	0.47	+1.0
5,436,236	+		PP_4774	0.47	-0.3
5,436,236	+		PP_4774	0.47	+1.0
5,436,237	-		PP_4774	0.48	-1.3
5,436,237	-		PP_4774	0.48	+0.2