Strain Fitness in Pseudomonas putida KT2440 around PP_4641

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
5,263,662	+		PP_4639	0.40	-1.2
5,263,715	+		PP_4639	0.45	+0.4
5,263,715	+		PP_4639	0.45	-0.2
5,263,716	-		PP_4639	0.45	-1.0
5,263,716	-		PP_4639	0.45	+0.2
5,263,716	-		PP_4639	0.45	+0.2
5,263,716	-		PP_4639	0.45	+0.7
5,263,888	+		PP_4639	0.63	+2.2
5,263,888	+		PP_4639	0.63	+0.5
5,263,888	+		PP_4639	0.63	+0.3
5,263,888	+		PP_4639	0.63	+0.0
5,263,888	+		PP_4639	0.63	+0.6
5,263,889	-		PP_4639	0.63	+1.2
5,263,889	-		PP_4639	0.63	+0.5
5,264,017	+		PP_4639	0.76	-0.4
5,264,018	-		PP_4639	0.76	-0.7
5,264,018	-		PP_4639	0.76	-0.3
5,264,018	-		PP_4639	0.76	+1.1
5,264,055	+		PP_4639	0.80	+1.5
5,264,055	+		PP_4639	0.80	-0.5
5,264,055	+		PP_4639	0.80	-0.9
5,264,055	+		PP_4639	0.80	+0.3
5,264,055	+		PP_4639	0.80	-0.7
5,264,056	-		PP_4639	0.80	-1.9
5,264,056	-		PP_4639	0.80	+1.0
5,264,056	-		PP_4639	0.80	+0.7
5,264,182	+				+0.9
5,264,182	+				+0.6
5,264,182	+				+0.2
5,264,183	-				-2.2
5,264,183	-				-0.6
5,264,183	-				-0.9
5,264,183	-				-0.4
5,264,183	-				-2.0
5,264,183	-				+0.8
5,264,314	+				+1.2
5,264,315	-				+0.2
5,264,361	+		PP_4640	0.16	-0.8
5,264,361	+		PP_4640	0.16	+0.4
5,264,397	+		PP_4640	0.34	-1.3
5,264,397	+		PP_4640	0.34	+0.4
5,264,397	+		PP_4640	0.34	-0.6
5,264,397	+		PP_4640	0.34	-1.7
5,264,398	-		PP_4640	0.34	-1.4
5,264,398	-		PP_4640	0.34	-0.4
5,264,445	+		PP_4640	0.58	+1.1
5,264,445	+		PP_4640	0.58	+0.8
5,264,445	+		PP_4640	0.58	-0.3
5,264,445	+		PP_4640	0.58	-1.5
5,264,445	+		PP_4640	0.58	-3.3
5,264,445	+		PP_4640	0.58	-0.3
5,264,446	-		PP_4640	0.59	-1.3
5,264,455	-		PP_4640	0.63	+0.5
5,264,497	-		PP_4640	0.84	+0.3
5,264,546	+				+0.7
5,264,687	+				+0.2
5,264,687	+				+0.3
5,264,741	-				-0.3
5,264,768	+		PP_4641	0.11	+1.3
5,264,768	+		PP_4641	0.11	+1.6
5,264,768	+		PP_4641	0.11	+0.3
5,264,769	-		PP_4641	0.11	-1.2
5,264,769	-		PP_4641	0.11	-2.4
5,264,857	+		PP_4641	0.15	-0.1
5,264,886	-		PP_4641	0.16	+2.4
5,264,886	-		PP_4641	0.16	-0.0
5,265,017	+		PP_4641	0.23	+0.4
5,265,017	+		PP_4641	0.23	-0.0
5,265,018	-		PP_4641	0.23	-0.1
5,265,026	+		PP_4641	0.23	-0.4
5,265,027	-		PP_4641	0.23	-0.2
5,265,204	-		PP_4641	0.32	-0.2
5,265,349	-		PP_4641	0.39	+0.3
5,265,434	+		PP_4641	0.43	+0.6
5,265,435	-		PP_4641	0.43	-1.2
5,265,435	-		PP_4641	0.43	+0.7
5,265,435	-		PP_4641	0.43	+0.8
5,265,518	+		PP_4641	0.47	+0.6
5,265,518	+		PP_4641	0.47	+0.5
5,265,518	+		PP_4641	0.47	+1.0
5,265,519	-		PP_4641	0.47	-0.5
5,265,519	-		PP_4641	0.47	+0.4
5,265,762	-		PP_4641	0.59	-0.2
5,265,762	-		PP_4641	0.59	+0.5
5,265,968	+		PP_4641	0.69	+0.4
5,265,968	+		PP_4641	0.69	+0.2
5,265,969	-		PP_4641	0.69	-1.7
5,265,977	+		PP_4641	0.69	+1.2
5,265,977	+		PP_4641	0.69	+0.4
5,265,977	+		PP_4641	0.69	+1.9
5,265,977	+		PP_4641	0.69	+0.4
5,265,977	+		PP_4641	0.69	+0.3
5,265,977	+		PP_4641	0.69	+0.9
5,265,978	-		PP_4641	0.69	+0.2
5,265,978	-		PP_4641	0.69	+0.8
5,265,978	-		PP_4641	0.69	+0.0
5,266,265	+		PP_4641	0.83	+0.8
5,266,364	+		PP_4641	0.88	+1.7
5,266,364	+		PP_4641	0.88	+1.3
5,266,364	+		PP_4641	0.88	-0.6
5,266,448	+				-0.4
5,266,448	+				-0.9
5,266,448	+				+0.4
5,266,449	-				+0.9
5,266,449	-				-0.8
5,266,449	-				+1.2
5,266,451	+				+1.1
5,266,451	+				+0.4
5,266,452	-				-0.7
5,266,452	-				-0.1
5,266,452	-				-1.0
5,266,470	-				-0.0
5,266,470	-				-0.6
5,266,470	-				+0.4
5,266,470	-				+0.4
5,266,556	-				+0.1
5,266,556	-				+0.3
5,266,596	+				+0.1
5,266,596	+				-0.2
5,266,596	+				+1.0
5,266,597	-				+0.9
5,266,597	-				+0.6
5,266,599	+				+0.2
5,266,599	+				-0.4
5,266,599	+				+0.9
5,266,599	+				+0.7
5,266,599	+				+0.6
5,266,599	+				-0.6
5,266,600	-				+1.1
5,266,600	-				-1.5
5,266,615	+				+1.0
5,266,695	+				-2.8
5,266,721	-				-1.8
5,266,742	-				-0.8
5,266,742	-				+0.6
5,266,742	-				+0.7
5,266,742	-				-1.8
5,266,745	+				-0.2
5,266,745	+				+1.1
5,266,745	+				+0.3
5,266,745	+				+0.3
5,266,745	+				+0.5
5,266,746	-				-1.1
5,266,748	-				-0.7
5,266,772	-				+0.7
5,267,051	-		PP_4642	0.74	+0.2
5,267,162	+				-1.6
5,267,162	+				-0.4
5,267,163	-				+1.3
5,267,167	-				+0.1
5,267,167	-				+0.3
5,267,170	+				-0.8
5,267,170	+				-1.5
5,267,170	+				+0.7
5,267,170	+				+0.1
5,267,171	-				+0.5
5,267,171	-				+0.4
5,267,174	-				+0.5
5,267,174	-				-0.8
5,267,214	+				+0.5
5,267,214	+				-0.9
5,267,214	+				-0.4
5,267,214	+				-0.2
5,267,214	+				-0.3
5,267,215	-				-0.8
5,267,215	-				+1.4
5,267,238	-				+1.2
5,267,249	+				-1.0
5,267,272	+				-0.5
5,267,273	-				+0.2
5,267,341	-				+1.0
5,267,366	+				+0.2
5,267,396	+				+0.5
5,267,420	+				-0.8
5,267,420	+				+0.5
5,267,420	+				-0.4
5,267,421	-				-1.1
5,267,421	-				+0.8
5,267,421	-				-0.4
5,267,421	-				-0.3
5,267,421	-				-0.1
5,267,421	-				+1.1
5,267,421	-				-1.8
5,267,421	-				+0.6
5,267,490	+				+1.1
5,267,490	+				-1.1
5,267,490	+				-0.8
5,267,491	-				-0.2
5,267,491	-				-0.8
5,267,517	+				+1.9
5,267,517	+				-0.9
5,267,517	+				+0.5
5,267,517	+				+1.0
5,267,517	+				-2.4
5,267,517	+				+0.3
5,267,517	+				-0.4
5,267,517	+				-0.9
5,267,517	+				+0.3
5,267,517	+				+0.5
5,267,518	-				+0.9
5,267,518	-				-1.9
5,267,518	-				+0.3
5,267,518	-				-1.1
5,267,518	-				-0.2
5,267,518	-				-0.6
5,267,518	-				-1.4
5,267,536	+				-0.7