Strain Fitness in Pseudomonas putida KT2440 around PP_3819

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,344,924	+		PP_3818	0.38	-0.7
4,344,925	-		PP_3818	0.38	-0.5
4,344,947	+		PP_3818	0.40	-0.4
4,344,947	+		PP_3818	0.40	+1.6
4,345,117	-		PP_3818	0.53	-0.2
4,345,117	-		PP_3818	0.53	-1.4
4,345,226	+		PP_3818	0.61	+0.0
4,345,227	-		PP_3818	0.61	-0.6
4,345,376	+		PP_3818	0.73	+0.8
4,345,376	+				+1.0
4,345,381	+		PP_3818	0.73	+0.1
4,345,451	-		PP_3818	0.78	+0.4
4,345,487	+		PP_3818	0.81	-1.0
4,345,488	-		PP_3818	0.81	+0.7
4,345,488	-		PP_3818	0.81	+0.3
4,345,584	+		PP_3818	0.89	+0.5
4,345,584	+		PP_3818	0.89	+0.9
4,345,585	-		PP_3818	0.89	+0.6
4,345,663	-				+1.3
4,345,663	-				-0.3
4,345,663	-				-0.3
4,345,663	-				+0.2
4,345,727	+				+0.1
4,345,727	+				+0.1
4,345,727	+				+0.7
4,345,727	+				-0.5
4,345,727	+				-0.6
4,345,728	-				+0.9
4,345,728	-				-1.7
4,345,728	-				+0.7
4,345,728	-				+0.8
4,345,728	-				-0.3
4,345,728	-				-1.2
4,345,728	-				+0.2
4,345,831	+				+0.4
4,346,039	+		PP_3819	0.22	-2.0
4,346,039	+		PP_3819	0.22	-1.5
4,346,319	+		PP_3819	0.43	-0.4
4,346,506	-		PP_3819	0.57	-0.7
4,346,563	+		PP_3819	0.61	-3.6
4,346,563	+		PP_3819	0.61	-0.9
4,346,564	-		PP_3819	0.61	-1.6
4,346,565	+		PP_3819	0.61	-1.7
4,346,566	-		PP_3819	0.61	-1.5
4,346,566	-		PP_3819	0.61	-2.8
4,346,566	-		PP_3819	0.61	-0.2
4,346,566	-		PP_3819	0.61	-1.5
4,346,566	-		PP_3819	0.61	-1.3
4,346,566	-		PP_3819	0.61	-0.2
4,346,611	-		PP_3819	0.65	-1.2
4,346,692	+		PP_3819	0.71	-1.1
4,346,692	+		PP_3819	0.71	-2.9
4,346,692	+		PP_3819	0.71	+0.1
4,346,693	-		PP_3819	0.71	-2.0
4,346,706	+		PP_3819	0.72	-0.6
4,346,707	-		PP_3819	0.72	+0.2
4,346,794	+				+1.4
4,346,799	+		PP_3819	0.78	+0.7
4,346,799	+		PP_3819	0.78	-1.9
4,346,800	-		PP_3819	0.78	+0.1
4,346,800	-		PP_3819	0.78	-0.6
4,346,800	-		PP_3819	0.78	-2.9
4,346,800	-				-1.5
4,346,800	-		PP_3819	0.78	-1.3
4,346,800	-		PP_3819	0.78	-0.4
4,346,928	+		PP_3819	0.88	-0.6
4,346,930	+		PP_3819	0.88	-0.5
4,346,930	+		PP_3819	0.88	-3.3
4,346,930	+		PP_3819	0.88	-1.6
4,346,931	-		PP_3819	0.88	-2.9
4,346,931	-		PP_3819	0.88	-1.2
4,347,094	-				-0.4
4,347,094	-				-1.0
4,347,094	-				+0.2
4,347,094	-				-0.5
4,347,094	-				-0.5
4,347,123	-				+0.4