Strain Fitness in Pseudomonas putida KT2440 around PP_2184

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,488,167	-				+1.0
2,488,354	+				-1.5
2,488,354	+				-2.3
2,488,354	+				-0.2
2,488,354	+				+0.9
2,488,355	-				+0.4
2,488,355	-				+0.4
2,488,355	-				+0.4
2,488,371	-				-0.1
2,488,371	-				-0.4
2,488,385	-				-1.9
2,488,385	-				+1.4
2,488,505	+				+0.1
2,488,506	-				-0.1
2,488,546	-				+0.1
2,488,546	-				+0.1
2,488,546	-				+0.2
2,488,575	-				-0.5
2,488,652	+				+0.4
2,488,652	+		PP_2183	0.22	-0.9
2,488,652	+		PP_2183	0.22	-0.5
2,488,653	-		PP_2183	0.22	-2.0
2,488,653	-		PP_2183	0.22	+0.3
2,488,657	+		PP_2183	0.23	-0.5
2,488,657	+		PP_2183	0.23	+0.1
2,488,719	-		PP_2183	0.36	-1.7
2,488,719	-		PP_2183	0.36	+0.7
2,489,034	+				+1.0
2,489,034	+				-2.2
2,489,035	-				-1.1
2,489,035	-				-1.2
2,489,035	-				+0.2
2,489,036	+				-0.2
2,489,037	-				-2.7
2,489,219	+		PP_2184	0.14	+1.0
2,489,220	-		PP_2184	0.14	+1.1
2,489,305	+		PP_2184	0.19	+0.0
2,489,305	+		PP_2184	0.19	+1.4
2,489,305	+		PP_2184	0.19	-0.5
2,489,305	+		PP_2184	0.19	-0.6
2,489,305	+		PP_2184	0.19	-0.3
2,489,305	+		PP_2184	0.19	+0.3
2,489,305	+		PP_2184	0.19	-0.6
2,489,306	-		PP_2184	0.19	+0.3
2,489,306	-		PP_2184	0.19	+0.7
2,489,306	-		PP_2184	0.19	-0.9
2,489,310	+		PP_2184	0.19	-1.2
2,489,310	+		PP_2184	0.19	-2.0
2,489,311	-		PP_2184	0.19	+0.7
2,489,379	+				+0.1
2,489,452	+		PP_2184	0.28	+1.1
2,489,453	-		PP_2184	0.28	+0.7
2,489,544	+		PP_2184	0.34	-0.6
2,489,544	+		PP_2184	0.34	+0.6
2,489,544	+		PP_2184	0.34	-0.1
2,489,545	-		PP_2184	0.34	+0.2
2,489,673	+		PP_2184	0.42	-0.6
2,489,673	+		PP_2184	0.42	-0.8
2,489,673	+		PP_2184	0.42	+1.0
2,489,674	-		PP_2184	0.42	-2.7
2,489,674	-		PP_2184	0.42	-0.6
2,489,674	-		PP_2184	0.42	-0.2
2,489,674	-		PP_2184	0.42	-0.4
2,489,674	-		PP_2184	0.42	+0.4
2,489,674	-		PP_2184	0.42	-0.0
2,489,674	-		PP_2184	0.42	-0.6
2,489,675	+		PP_2184	0.43	-0.1
2,489,675	+		PP_2184	0.43	+0.1
2,489,675	+		PP_2184	0.43	-2.9
2,489,675	+		PP_2184	0.43	+0.5
2,489,675	+		PP_2184	0.43	+0.8
2,489,675	+		PP_2184	0.43	-0.6
2,489,675	+		PP_2184	0.43	-0.0
2,489,675	+		PP_2184	0.43	+0.3
2,489,675	+		PP_2184	0.43	+0.6
2,489,675	+		PP_2184	0.43	+0.4
2,489,675	+		PP_2184	0.43	+0.9
2,489,675	+		PP_2184	0.43	-0.8
2,489,675	+		PP_2184	0.43	+0.1
2,489,675	+		PP_2184	0.43	-1.9
2,489,675	+		PP_2184	0.43	+0.9
2,489,675	+		PP_2184	0.43	-0.2
2,489,675	+		PP_2184	0.43	+0.8
2,489,676	-		PP_2184	0.43	+1.2
2,489,676	-		PP_2184	0.43	+0.2
2,489,676	-		PP_2184	0.43	+0.8
2,489,676	-		PP_2184	0.43	+0.4
2,489,676	-		PP_2184	0.43	-0.2
2,489,676	-		PP_2184	0.43	+0.3
2,489,676	-		PP_2184	0.43	+0.1
2,489,676	-		PP_2184	0.43	+1.1
2,489,676	-		PP_2184	0.43	-0.2
2,489,676	-		PP_2184	0.43	-0.3
2,489,676	-		PP_2184	0.43	-1.4
2,489,679	+		PP_2184	0.43	-0.9
2,489,679	+		PP_2184	0.43	-0.0
2,489,679	+		PP_2184	0.43	-0.1
2,489,679	+		PP_2184	0.43	-0.7
2,489,679	+		PP_2184	0.43	+0.3
2,489,679	+		PP_2184	0.43	-0.1
2,489,679	+		PP_2184	0.43	-0.1
2,489,679	+		PP_2184	0.43	-1.3
2,489,680	-		PP_2184	0.43	-0.1
2,489,680	-		PP_2184	0.43	+0.1
2,489,680	-		PP_2184	0.43	-0.6
2,489,680	-		PP_2184	0.43	+0.4
2,489,680	-		PP_2184	0.43	+0.1
2,489,680	-		PP_2184	0.43	-3.4
2,489,680	-				+1.3
2,489,680	-		PP_2184	0.43	-0.0
2,489,680	-		PP_2184	0.43	-1.4
2,489,680	-		PP_2184	0.43	+0.4
2,489,694	+		PP_2184	0.44	-0.9
2,489,752	-		PP_2184	0.47	+1.3
2,489,768	-		PP_2184	0.48	-1.9
2,489,822	+		PP_2184	0.52	+0.8
2,489,822	+		PP_2184	0.52	+0.6
2,489,823	-		PP_2184	0.52	+0.5
2,489,949	-		PP_2184	0.60	-0.5
2,490,118	-		PP_2184	0.71	+0.0
2,490,129	-		PP_2184	0.71	+0.3
2,490,188	-		PP_2184	0.75	-0.8
2,490,219	+		PP_2184	0.77	+0.8
2,490,220	-		PP_2184	0.77	+0.1
2,490,281	+		PP_2184	0.81	+0.5
2,490,281	+		PP_2184	0.81	+0.7
2,490,501	-				-0.2
2,490,510	+				-1.1
2,490,534	+				-0.6
2,490,535	-				-0.3
2,490,535	-				-0.3
2,490,535	-				+0.5
2,490,607	+				+0.8
2,490,917	+		PP_2185	0.12	+0.0
2,490,917	+		PP_2185	0.12	-0.2
2,490,918	-		PP_2185	0.12	+0.1
2,490,918	-		PP_2185	0.12	+0.5
2,490,918	-		PP_2185	0.12	-0.1
2,491,070	+		PP_2185	0.17	+0.7
2,491,071	-		PP_2185	0.17	+0.1
2,491,079	+		PP_2185	0.17	+1.1
2,491,141	+		PP_2185	0.20	+0.4
2,491,318	+		PP_2185	0.26	-0.7
2,491,319	-		PP_2185	0.26	-0.4
2,491,551	-		PP_2185	0.34	-0.7
2,491,551	-		PP_2185	0.34	-1.2
2,491,551	-		PP_2185	0.34	-1.0