Strain Fitness in Pseudomonas putida KT2440 around PP_1311

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,497,126	+		PP_1309	0.65	-2.4
1,497,126	+		PP_1309	0.65	-2.8
1,497,126	+		PP_1309	0.65	-2.0
1,497,290	+				-2.9
1,497,291	-				-1.1
1,497,291	-				-3.0
1,497,291	-				+0.1
1,497,292	+				-2.6
1,497,307	+				-0.9
1,497,333	+				-3.1
1,497,333	+				+0.6
1,497,334	-				+1.9
1,497,334	-				-0.2
1,497,334	-				+0.4
1,497,375	-				-0.4
1,497,406	+				-1.6
1,497,407	-				+0.6
1,497,473	+				-2.8
1,497,614	+		PP_1310	0.32	-2.4
1,497,614	+		PP_1310	0.32	+0.2
1,497,615	-		PP_1310	0.32	-0.3
1,497,926	+		PP_1310	0.81	-1.1
1,497,927	-		PP_1310	0.81	-1.8
1,499,541	+				+0.6
1,500,095	-		PP_1312	0.46	-0.7
1,500,352	-				+1.4