Strain Fitness in Pseudomonas putida KT2440 around PP_1044

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,192,866	+		PP_1043	0.62	+0.3
1,192,922	+		PP_1043	0.65	-0.9
1,192,922	+		PP_1043	0.65	+0.7
1,192,923	-		PP_1043	0.65	+1.0
1,192,923	-		PP_1043	0.65	+0.9
1,193,050	+		PP_1043	0.71	+0.7
1,193,159	+		PP_1043	0.76	-0.2
1,193,159	+		PP_1043	0.76	+0.4
1,193,159	+		PP_1043	0.76	+0.4
1,193,333	+		PP_1043	0.85	-3.2
1,193,334	-		PP_1043	0.85	-0.8
1,193,334	-		PP_1043	0.85	+0.9
1,193,574	-				-0.5
1,193,694	-				-1.8
1,193,857	+				+0.6
1,194,001	-				+1.5
1,194,183	+		PP_1044	0.19	+1.9
1,194,500	+		PP_1044	0.39	-3.1
1,194,564	+		PP_1044	0.42	+0.6
1,195,008	-		PP_1044	0.69	+0.4
1,195,046	+		PP_1044	0.72	+1.0
1,195,047	-		PP_1044	0.72	+0.8
1,195,080	+		PP_1044	0.74	+0.8
1,195,086	+		PP_1044	0.74	+1.7
1,195,291	-		PP_1044	0.86	+2.7
1,195,467	+				-1.9
1,195,468	-				-2.0
1,195,468	-				+0.1
1,195,719	-		PP_1045	0.49	+0.4
1,195,719	-		PP_1045	0.49	-0.7
1,195,948	+				-1.1
1,195,948	+				-1.8
1,195,948	+				+0.3
1,195,952	+				-1.1
1,195,952	+				-0.2
1,195,952	+				-0.1
1,195,953	-				-0.1
1,195,995	-				-0.5
1,195,995	-				-0.8
1,195,995	-				-1.1
1,195,995	-				+0.4
1,195,995	-				+1.3
1,195,995	-				+0.1
1,196,026	+				+0.2
1,196,036	+				-0.6
1,196,037	-				+0.4
1,196,037	-				+1.0
1,196,037	-				-0.4
1,196,037	-				-0.6
1,196,037	-				+0.5
1,196,074	-				-0.5
1,196,180	+		PP_1046	0.14	-0.8
1,196,180	+		PP_1046	0.14	-0.2
1,196,180	+				-0.4
1,196,180	+		PP_1046	0.14	-1.2
1,196,181	-		PP_1046	0.14	-0.3
1,196,377	-		PP_1046	0.25	+0.3
1,196,377	-		PP_1046	0.25	+0.8
1,196,377	-		PP_1046	0.25	+0.5
1,196,377	-		PP_1046	0.25	-0.0
1,196,377	-		PP_1046	0.25	+0.5
1,196,419	+		PP_1046	0.27	-0.8
1,196,422	+		PP_1046	0.27	-0.8
1,196,422	+		PP_1046	0.27	-0.6
1,196,422	+		PP_1046	0.27	-0.5
1,196,422	+		PP_1046	0.27	+0.8
1,196,423	-		PP_1046	0.28	-0.5
1,196,423	-		PP_1046	0.28	-0.1
1,196,423	-		PP_1046	0.28	-1.1
1,196,423	-		PP_1046	0.28	+0.5