Strain Fitness in Pseudomonas putida KT2440 around PP_0167

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0166 and PP_0167 overlap by 11 nucleotidesPP_0167 and PP_5429 are separated by 63 nucleotidesPP_5429 and PP_5430 are separated by 85 nucleotidesPP_5430 and PP_0168 are separated by 409 nucleotides PP_0166: PP_0166 - HlyD family secretion protein, at 189,995 to 191,371 _0166 PP_0167: PP_0167 - Toxin secretion ATP-binding protein, at 191,361 to 193,517 _0167 PP_5429: PP_5429 - protein of unknown function, at 193,581 to 193,796 _5429 PP_5430: PP_5430 - protein of unknown function, at 193,882 to 194,085 _5430 PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543 _0168 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 190.758 kb on + strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.779 kb on + strand, within PP_0166at 190.864 kb on - strand, within PP_0166at 190.941 kb on - strand, within PP_0166at 191.162 kb on - strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.362 kb on + strandat 191.362 kb on + strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.461 kb on - strandat 191.718 kb on + strandat 191.719 kb on - strand, within PP_0167at 191.831 kb on - strand, within PP_0167at 191.914 kb on + strand, within PP_0167at 191.915 kb on - strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.040 kb on + strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.283 kb on + strand, within PP_0167at 192.284 kb on - strand, within PP_0167at 192.284 kb on - strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.413 kb on + strand, within PP_0167at 192.414 kb on - strand, within PP_0167at 192.414 kb on - strand, within PP_0167at 192.415 kb on + strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.416 kb on - strand, within PP_0167at 192.641 kb on + strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.642 kb on - strand, within PP_0167at 192.748 kb on + strand, within PP_0167at 192.770 kb on + strand, within PP_0167at 192.866 kb on + strand, within PP_0167at 192.866 kb on + strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.867 kb on - strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.868 kb on + strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.869 kb on - strand, within PP_0167at 192.882 kb on - strand, within PP_0167at 192.937 kb on + strand, within PP_0167at 192.938 kb on - strand, within PP_0167at 193.009 kb on - strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.012 kb on + strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.013 kb on - strand, within PP_0167at 193.129 kb on + strand, within PP_0167at 193.137 kb on + strand, within PP_0167at 193.137 kb on + strand, within PP_0167at 193.189 kb on - strand, within PP_0167at 193.189 kb on - strand, within PP_0167at 193.381 kb on - strandat 193.446 kb on - strandat 193.620 kb on - strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.626 kb on + strand, within PP_5429at 193.627 kb on - strand, within PP_5429at 193.682 kb on + strand, within PP_5429at 193.692 kb on + strand, within PP_5429at 193.692 kb on + strand, within PP_5429at 193.693 kb on - strand, within PP_5429at 193.693 kb on - strand, within PP_5429at 193.773 kb on + strand, within PP_5429at 193.819 kb on + strandat 193.820 kb on - strandat 193.833 kb on - strandat 193.858 kb on + strandat 193.858 kb on + strandat 193.858 kb on + strandat 193.859 kb on - strandat 193.859 kb on - strandat 193.887 kb on + strandat 193.888 kb on - strandat 193.888 kb on - strandat 193.889 kb on + strandat 193.889 kb on + strandat 193.890 kb on - strandat 193.890 kb on - strandat 193.997 kb on + strand, within PP_5430at 193.997 kb on + strand, within PP_5430at 193.998 kb on - strand, within PP_5430at 194.025 kb on + strand, within PP_5430at 194.026 kb on - strand, within PP_5430at 194.096 kb on + strandat 194.096 kb on + strandat 194.138 kb on - strandat 194.150 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.208 kb on - strandat 194.208 kb on - strandat 194.221 kb on - strandat 194.235 kb on - strandat 194.253 kb on + strandat 194.254 kb on - strandat 194.254 kb on - strandat 194.254 kb on - strandat 194.283 kb on + strandat 194.284 kb on - strandat 194.284 kb on - strandat 194.284 kb on - strandat 194.289 kb on - strandat 194.294 kb on + strandat 194.309 kb on - strandat 194.309 kb on - strandat 194.338 kb on + strandat 194.422 kb on + strandat 194.423 kb on - strandat 194.441 kb on + strandat 194.467 kb on + strandat 194.468 kb on - strandat 194.508 kb on + strandat 194.508 kb on + strandat 194.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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190,758 + PP_0166 0.55 -3.0
190,758 + PP_0166 0.55 -3.0
190,759 - PP_0166 0.55 -4.4
190,759 - PP_0166 0.55 -1.8
190,779 + PP_0166 0.57 -2.5
190,864 - PP_0166 0.63 -3.1
190,941 - PP_0166 0.69 -4.3
191,162 - PP_0166 0.85 -0.6
191,192 + PP_0166 0.87 -3.0
191,192 + PP_0166 0.87 -3.0
191,192 + PP_0166 0.87 -3.3
191,192 + PP_0166 0.87 -1.9
191,193 - PP_0166 0.87 -0.9
191,193 - PP_0166 0.87 -3.7
191,362 + -3.8
191,362 + -2.3
191,363 - -3.7
191,363 - -1.3
191,363 - -1.9
191,461 - -2.7
191,718 + -1.4
191,719 - PP_0167 0.17 -2.7
191,831 - PP_0167 0.22 -2.7
191,914 + PP_0167 0.26 -3.8
191,915 - PP_0167 0.26 -2.5
192,008 + PP_0167 0.30 -3.3
192,008 + PP_0167 0.30 -3.3
192,008 + PP_0167 0.30 -1.0
192,008 + PP_0167 0.30 -3.4
192,040 + PP_0167 0.31 -5.0
192,041 - PP_0167 0.32 -3.0
192,041 - PP_0167 0.32 -2.3
192,235 + PP_0167 0.41 -3.2
192,235 + PP_0167 0.41 -0.9
192,235 + PP_0167 0.41 -2.0
192,235 + PP_0167 0.41 -2.1
192,235 + PP_0167 0.41 -1.6
192,236 - PP_0167 0.41 -1.7
192,236 - PP_0167 0.41 -4.7
192,236 - PP_0167 0.41 -4.2
192,236 - PP_0167 0.41 -2.0
192,236 - PP_0167 0.41 -2.4
192,236 - PP_0167 0.41 -2.7
192,283 + PP_0167 0.43 -1.0
192,284 - PP_0167 0.43 -2.6
192,284 - PP_0167 0.43 -3.5
192,413 + PP_0167 0.49 -3.9
192,413 + PP_0167 0.49 -2.7
192,413 + PP_0167 0.49 -5.1
192,413 + PP_0167 0.49 -1.2
192,413 + PP_0167 0.49 -2.2
192,413 + PP_0167 0.49 -0.7
192,414 - PP_0167 0.49 -2.5
192,414 - PP_0167 0.49 -2.0
192,415 + PP_0167 0.49 -2.2
192,416 - PP_0167 0.49 -1.9
192,416 - PP_0167 0.49 -3.1
192,416 - PP_0167 0.49 -1.4
192,416 - PP_0167 0.49 -3.4
192,416 - PP_0167 0.49 -3.6
192,416 - PP_0167 0.49 -4.4
192,641 + PP_0167 0.59 -2.3
192,642 - PP_0167 0.59 -2.1
192,642 - PP_0167 0.59 -2.5
192,642 - PP_0167 0.59 -1.7
192,748 + PP_0167 0.64 -3.7
192,770 + PP_0167 0.65 -4.3
192,866 + PP_0167 0.70 -2.2
192,866 + PP_0167 0.70 -3.2
192,867 - PP_0167 0.70 -1.5
192,867 - PP_0167 0.70 -3.8
192,867 - PP_0167 0.70 -2.9
192,868 + PP_0167 0.70 -2.9
192,868 + PP_0167 0.70 -3.1
192,868 + PP_0167 0.70 -3.2
192,868 + PP_0167 0.70 -2.0
192,869 - PP_0167 0.70 -2.2
192,869 - PP_0167 0.70 -2.5
192,869 - PP_0167 0.70 -4.0
192,882 - PP_0167 0.71 -3.4
192,937 + PP_0167 0.73 -3.0
192,938 - PP_0167 0.73 -0.4
193,009 - PP_0167 0.76 -2.2
193,012 + PP_0167 0.77 -3.8
193,012 + PP_0167 0.77 -4.2
193,012 + PP_0167 0.77 -3.4
193,012 + PP_0167 0.77 -3.1
193,012 + PP_0167 0.77 -2.9
193,013 - PP_0167 0.77 -3.2
193,013 - PP_0167 0.77 -3.5
193,013 - PP_0167 0.77 -1.6
193,013 - PP_0167 0.77 -1.5
193,013 - PP_0167 0.77 -2.0
193,013 - PP_0167 0.77 -3.2
193,013 - PP_0167 0.77 -3.8
193,129 + PP_0167 0.82 -2.5
193,137 + PP_0167 0.82 -3.1
193,137 + PP_0167 0.82 -1.6
193,189 - PP_0167 0.85 -2.5
193,189 - PP_0167 0.85 -2.1
193,381 - -3.6
193,446 - -0.5
193,620 - PP_5429 0.18 -1.6
193,626 + PP_5429 0.21 -3.3
193,626 + PP_5429 0.21 -2.8
193,626 + PP_5429 0.21 +0.3
193,627 - PP_5429 0.21 -1.2
193,682 + PP_5429 0.47 -2.6
193,692 + PP_5429 0.51 -0.7
193,692 + PP_5429 0.51 -0.0
193,693 - PP_5429 0.52 -2.2
193,693 - PP_5429 0.52 -2.8
193,773 + PP_5429 0.89 +0.3
193,819 + +0.5
193,820 - -1.6
193,833 - -2.6
193,858 + +0.2
193,858 + -0.0
193,858 + +0.2
193,859 - -1.5
193,859 - -0.5
193,887 + -1.4
193,888 - -1.5
193,888 - -3.6
193,889 + -1.4
193,889 + -2.2
193,890 - -2.0
193,890 - -2.5
193,997 + PP_5430 0.56 +1.5
193,997 + PP_5430 0.56 -0.7
193,998 - PP_5430 0.57 -3.1
194,025 + PP_5430 0.70 -0.5
194,026 - PP_5430 0.71 -1.6
194,096 + +1.0
194,096 + -0.7
194,138 - -1.3
194,150 - -1.3
194,192 - -3.4
194,192 - -1.7
194,208 - -1.3
194,208 - -2.6
194,221 - -3.4
194,235 - -1.6
194,253 + +0.1
194,254 - -2.2
194,254 - -2.6
194,254 - -2.4
194,283 + -1.2
194,284 - -1.4
194,284 - -1.2
194,284 - -1.6
194,289 - -0.7
194,294 + -1.4
194,309 - -4.9
194,309 - -2.7
194,338 + -1.4
194,422 + -1.6
194,423 - -3.3
194,441 + -2.5
194,467 + -2.3
194,468 - -3.1
194,508 + -2.0
194,508 + -2.3
194,509 - -2.4

Or see this region's nucleotide sequence