Strain Fitness in Pseudomonas putida KT2440 around PP_5743

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,772,349	+				-2.6
3,772,350	-				-0.0
3,772,350	-				+2.5
3,772,350	-				-2.0
3,772,350	-				+0.7
3,772,350	-				-0.7
3,772,646	+		PP_3332	0.89	-1.1
3,772,647	-		PP_3332	0.89	+0.6
3,772,647	-		PP_3332	0.89	+1.5
3,772,665	-				+0.4
3,772,665	-				-2.0
3,772,703	+				-1.2
3,772,724	+				+0.4
3,772,725	-				-0.7
3,772,725	-				+1.0
3,772,756	+				-1.8
3,772,757	-				+0.9
3,772,851	+		PP_3333	0.12	+2.5
3,772,852	-		PP_3333	0.12	-1.9
3,772,951	+		PP_3333	0.38	-1.5
3,772,952	-		PP_3333	0.38	+0.5
3,773,222	-				-1.7
3,773,516	+		PP_5743	0.22	+3.1
3,773,584	+		PP_5743	0.28	+1.2
3,773,586	+		PP_5743	0.29	+2.6
3,773,586	+		PP_5743	0.29	+0.2
3,773,586	+		PP_5743	0.29	+2.3
3,773,587	-		PP_5743	0.29	+1.0
3,773,587	-		PP_5743	0.29	+2.1
3,773,634	+		PP_5743	0.33	-0.3
3,773,655	+		PP_5743	0.35	+0.9
3,773,655	+		PP_5743	0.35	-1.7
3,773,655	+		PP_5743	0.35	+0.5
3,773,655	+		PP_5743	0.35	-2.1
3,773,655	+		PP_5743	0.35	-0.3
3,773,656	-		PP_5743	0.36	+2.2
3,773,656	-		PP_5743	0.36	-0.1
3,773,656	-		PP_5743	0.36	+0.0
3,773,656	-		PP_5743	0.36	+0.6
3,773,656	-		PP_5743	0.36	-1.5
3,773,656	-		PP_5743	0.36	+0.1
3,773,656	-		PP_5743	0.36	+1.1
3,773,658	-		PP_5743	0.36	+0.1
3,773,658	-		PP_5743	0.36	-0.8
3,773,724	+		PP_5743	0.42	+2.0
3,773,724	+		PP_5743	0.42	-0.7
3,773,937	+		PP_5743	0.63	-2.3
3,773,992	+		PP_5743	0.69	+0.6
3,773,993	-		PP_5743	0.69	+2.0
3,773,993	-		PP_5743	0.69	-0.6
3,774,014	-		PP_5743	0.71	+0.9
3,774,070	-		PP_5743	0.77	-0.7
3,774,104	-		PP_5743	0.80	+0.7
3,774,288	+				+1.1
3,774,289	-				-0.9
3,774,289	-				+0.9
3,774,619	+		PP_3335	0.41	-2.0
3,774,620	-		PP_3335	0.41	+1.2
3,774,620	-		PP_3335	0.41	+0.2
3,774,620	-		PP_3335	0.41	+1.1
3,774,681	+		PP_3335	0.51	+0.6
3,774,681	+		PP_3335	0.51	-2.5
3,774,681	+		PP_3335	0.51	+0.3
3,774,681	+		PP_3335	0.51	-0.5
3,774,681	+		PP_3335	0.51	-1.1
3,774,681	+		PP_3335	0.51	-0.0
3,774,681	+		PP_3335	0.51	-0.2
3,774,682	-		PP_3335	0.52	-2.0
3,774,682	-		PP_3335	0.52	+0.3
3,774,684	+		PP_3335	0.52	-2.5
3,774,715	-		PP_3335	0.57	+0.3
3,774,794	+		PP_3335	0.70	+0.0
3,774,795	-		PP_3335	0.70	-3.0
3,775,218	+		PP_3336	0.43	-1.1
3,775,219	-		PP_3336	0.43	-3.5
3,775,252	+		PP_3336	0.50	+3.8
3,775,271	+		PP_3336	0.55	-0.8
3,775,271	+		PP_3336	0.55	-0.5
3,775,272	-		PP_3336	0.55	-2.6