Strain Fitness in Pseudomonas putida KT2440 around PP_5673

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,942,748	-		PP_4350	0.16	+0.9
4,942,800	-		PP_4350	0.20	-0.1
4,942,848	-		PP_4350	0.24	+3.8
4,942,909	+		PP_4350	0.29	-2.2
4,942,963	+		PP_4350	0.34	-0.2
4,943,116	+		PP_4350	0.47	-0.3
4,943,202	+		PP_4350	0.55	-1.0
4,943,203	-		PP_4350	0.55	+0.4
4,943,499	-		PP_4350	0.80	-0.6
4,943,501	+		PP_4350	0.80	+1.5
4,943,565	+		PP_4350	0.86	-0.9
4,943,565	+		PP_4350	0.86	-1.0
4,943,951	+		PP_5673	0.25	+1.3
4,943,956	-		PP_5673	0.25	+0.1
4,943,975	+		PP_5673	0.27	+0.9
4,944,035	-		PP_5673	0.34	+0.8
4,944,075	-		PP_5673	0.38	+1.0
4,944,164	-		PP_5673	0.48	-1.7
4,944,265	-		PP_5673	0.59	-1.1
4,944,350	+		PP_5673	0.68	-1.1
4,944,399	+		PP_5673	0.74	-0.8
4,944,399	+		PP_5673	0.74	-1.1
4,944,400	-		PP_5673	0.74	-2.1
4,944,472	+		PP_5673	0.82	-2.0
4,944,507	-		PP_5673	0.85	-3.4
4,944,600	+				+1.2
4,944,604	+				-0.1
4,944,703	+				-1.5
4,944,709	-				-0.4
4,944,868	-				+1.0
4,944,868	-				+1.1
4,944,870	-				-1.2
4,944,977	+				-0.2
4,945,116	+				-0.4
4,945,117	-				+1.3
4,945,117	-				-0.5
4,945,117	-				-2.8
4,945,117	-				+2.3
4,945,117	-				+0.7
4,945,249	+				-0.6
4,945,284	+				+0.2
4,945,284	+				-2.9
4,945,284	+				+0.5
4,945,285	-				+2.1
4,945,304	+				-0.9
4,945,305	-				+0.3
4,945,361	-				-0.2
4,945,425	-				-0.8
4,945,538	+				-1.9
4,945,538	+				-3.2
4,945,538	+				-2.6
4,945,538	+				-3.5
4,945,538	+				+0.5
4,945,538	+				-0.3
4,945,538	+				-2.6
4,945,539	-				-1.7
4,945,539	-				-0.6
4,945,539	-				-1.1
4,945,539	-				-1.7
4,945,539	-				-1.8
4,945,565	+		PP_4352	0.11	+0.2
4,945,607	+		PP_4352	0.15	-1.8
4,945,607	+		PP_4352	0.15	-1.9
4,945,607	+		PP_4352	0.15	+0.2
4,945,607	+		PP_4352	0.15	-0.5
4,945,607	+		PP_4352	0.15	-2.6
4,945,607	+		PP_4352	0.15	-2.1
4,945,607	+		PP_4352	0.15	-2.9
4,945,608	-		PP_4352	0.15	-2.8
4,945,608	-		PP_4352	0.15	-1.6
4,945,608	-		PP_4352	0.15	-1.5
4,945,608	-		PP_4352	0.15	-1.1
4,945,608	-		PP_4352	0.15	-2.4
4,945,608	-		PP_4352	0.15	-2.5