Strain Fitness in Pseudomonas putida KT2440 around PP_5566

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,499,703	-				+1.9
3,499,703	-				+0.6
3,499,807	+				+1.3
3,499,808	-				+0.3
3,499,847	+				-0.9
3,499,866	-				+2.3
3,499,866	-				+0.5
3,499,873	-				-0.0
3,499,873	-				-0.4
3,499,885	-				+0.5
3,499,885	-				-3.6
3,499,885	-				+0.1
3,500,009	+				-1.4
3,500,050	+				-2.4
3,500,051	-				+1.6
3,500,054	+				-1.7
3,500,064	+				-1.0
3,500,064	+				-0.0
3,500,065	-				-0.2
3,500,171	-		PP_5565	0.43	-2.5
3,500,184	+		PP_5565	0.48	-1.6
3,500,202	-		PP_5565	0.55	-1.1
3,500,204	+		PP_5565	0.55	-2.0
3,500,204	+		PP_5565	0.55	-0.8
3,500,205	-		PP_5565	0.56	-2.3
3,500,213	+		PP_5565	0.59	+0.4
3,500,253	-		PP_5565	0.73	-2.8
3,500,285	+		PP_5565	0.85	-1.7
3,500,523	+				+0.3
3,500,593	+		PP_5566	0.21	-1.4
3,500,594	-		PP_5566	0.22	-1.1
3,500,594	-		PP_5566	0.22	-0.7
3,500,631	+		PP_5566	0.37	-0.0
3,500,631	+		PP_5566	0.37	+1.6
3,500,631	+		PP_5566	0.37	-0.5
3,500,632	-		PP_5566	0.38	-0.7
3,500,632	-		PP_5566	0.38	-2.9
3,500,654	+		PP_5566	0.47	-2.3
3,500,726	+		PP_5566	0.77	-0.4
3,500,742	-		PP_5566	0.83	-3.3
3,500,808	+				+0.4
3,500,808	+				-0.9
3,500,809	-				-2.3
3,500,897	-				+1.3
3,500,979	+				-0.5
3,500,980	-				-1.8
3,500,980	-				+0.3
3,501,026	+				-0.5
3,501,026	+				-1.2
3,501,027	-				+1.0
3,501,027	-				+0.8
3,501,195	+				-3.3
3,501,405	+		PP_5567	0.72	+3.9
3,501,510	+				-2.4
3,501,511	-				+2.6
3,501,525	-				+3.2
3,501,770	+		PP_5568	0.22	+0.7