Strain Fitness in Pseudomonas putida KT2440 around PP_5473

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
1,746,619	+		PP_1545	0.16	-1.6
1,746,619	+		PP_1545	0.16	-3.1
1,746,620	-		PP_1545	0.16	-0.5
1,746,696	+		PP_1545	0.32	+0.5
1,746,697	-		PP_1545	0.33	-2.0
1,746,697	-		PP_1545	0.33	+2.6
1,746,731	+		PP_1545	0.40	+0.7
1,746,732	-		PP_1545	0.40	-1.9
1,746,806	+		PP_1545	0.56	-0.8
1,746,806	+		PP_1545	0.56	-1.9
1,746,807	-		PP_1545	0.57	+1.4
1,746,807	-		PP_1545	0.57	+1.7
1,746,847	+		PP_1545	0.65	+1.1
1,746,847	+		PP_1545	0.65	+1.7
1,746,848	-		PP_1545	0.66	+0.8
1,746,848	-		PP_1545	0.66	-0.4
1,746,879	+		PP_1545	0.72	-1.0
1,746,880	-		PP_1545	0.73	-0.4
1,746,880	-		PP_1545	0.73	+0.3
1,746,880	-		PP_1545	0.73	+0.7
1,746,880	-		PP_1545	0.73	+0.4
1,747,073	-		PP_1546	0.26	+0.0
1,747,073	-		PP_1546	0.26	-1.0
1,747,078	+		PP_1546	0.28	+0.7
1,747,150	+		PP_1546	0.55	+2.0
1,747,170	+		PP_1546	0.62	+1.0
1,747,224	+		PP_1546	0.82	+0.8
1,747,224	+		PP_1546	0.82	+0.1
1,747,225	-		PP_1546	0.83	+1.8
1,747,300	+				+0.2
1,747,456	+		PP_5473	0.76	-1.3
1,747,470	+		PP_5473	0.82	-1.7
1,747,577	+				-0.5
1,747,578	-				-1.7
1,747,578	-				+0.4
1,747,578	-				+1.4
1,747,578	-				-1.0
1,747,721	+				+3.1
1,747,721	+				+0.1
1,747,722	-				-0.2
1,747,771	+				+1.4
1,747,793	+				+0.8
1,747,803	-				-1.4
1,747,825	-				-3.7
1,747,825	-				-0.3
1,747,888	+				+0.6
1,747,889	-				-3.5
1,747,889	-				-0.2
1,747,919	-				+0.2
1,748,001	+				+0.5
1,748,001	+				+1.0
1,748,001	+				-0.7
1,748,002	-				-3.2
1,748,002	-				+1.9
1,748,002	-				-1.0
1,748,002	-				+0.1
1,748,002	-				-2.1
1,748,040	+				-0.4
1,748,041	-				-0.9
1,748,237	+				-0.7
1,748,237	+				-1.4
1,748,237	+				+0.1
1,748,237	+				-0.6
1,748,237	+				+0.4
1,748,238	-				-0.0
1,748,238	-				+0.2
1,748,238	-				+0.1
1,748,344	-		PP_1548	0.26	+0.2