Strain Fitness in Pseudomonas putida KT2440 around PP_5382

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
6,133,437	+		PP_5380	0.79	+0.3
6,133,437	+		PP_5380	0.79	-0.3
6,133,437	+		PP_5380	0.79	-2.8
6,133,437	+		PP_5380	0.79	+0.2
6,133,437	+		PP_5380	0.79	-0.4
6,133,438	-		PP_5380	0.79	-1.6
6,133,438	-		PP_5380	0.79	+1.3
6,133,467	+		PP_5380	0.81	-0.6
6,133,468	-		PP_5380	0.81	-0.6
6,133,473	+		PP_5380	0.81	+0.6
6,133,473	+		PP_5380	0.81	+3.1
6,133,473	+		PP_5380	0.81	-1.4
6,133,473	+		PP_5380	0.81	+1.0
6,133,473	+		PP_5380	0.81	+0.6
6,133,473	+		PP_5380	0.81	+0.4
6,133,473	+		PP_5380	0.81	-0.5
6,133,473	+		PP_5380	0.81	-1.4
6,133,473	+		PP_5380	0.81	+1.1
6,133,474	-		PP_5380	0.81	+0.2
6,133,474	-		PP_5380	0.81	+1.1
6,133,474	-		PP_5380	0.81	-2.3
6,133,474	-		PP_5380	0.81	-1.2
6,133,474	-		PP_5380	0.81	+2.4
6,133,474	-		PP_5380	0.81	+1.3
6,133,474	-		PP_5380	0.81	-1.7
6,133,474	-		PP_5380	0.81	+0.7
6,133,474	-		PP_5380	0.81	-0.1
6,133,603	+		PP_5380	0.88	+0.9
6,133,663	+				+1.0
6,133,663	+				-3.1
6,133,664	-				-1.7
6,133,664	-				-1.7
6,133,664	-				+0.6
6,133,667	+				+0.0
6,133,667	+				-0.1
6,133,667	+				-2.4
6,133,668	-				-3.3
6,133,668	-				-0.3
6,133,668	-				-2.2
6,133,668	-				+1.1
6,133,668	-				+0.6
6,133,704	+				+0.1
6,133,704	+				-1.0
6,133,796	+				+0.4
6,133,804	+				-1.8
6,133,804	+				+1.8
6,133,858	-				-0.4
6,133,877	-				-0.4
6,133,887	+				-0.1
6,133,997	+				+1.4
6,133,998	-				+0.7
6,134,017	-				+0.6
6,134,026	+				-0.5
6,134,027	-				+1.3
6,134,062	+				-0.2
6,134,115	+		PP_5381	0.26	+0.3
6,134,116	-		PP_5381	0.27	-0.2
6,134,116	-		PP_5381	0.27	-0.5
6,134,116	-		PP_5381	0.27	-1.2
6,134,116	-		PP_5381	0.27	-0.0
6,134,116	-		PP_5381	0.27	-0.5
6,134,219	+		PP_5381	0.67	-0.6
6,134,337	+				-2.9
6,134,337	+				+0.8
6,134,338	-				-2.2
6,134,338	-				-2.9
6,134,338	-				-1.9
6,134,393	+				-0.9
6,134,494	+		PP_5382	0.17	-2.9
6,134,494	+		PP_5382	0.17	+2.1
6,134,495	-		PP_5382	0.17	+0.2
6,134,495	-		PP_5382	0.17	-3.4
6,134,553	+		PP_5382	0.33	-2.1
6,134,554	-		PP_5382	0.33	-3.2
6,134,554	-		PP_5382	0.33	-0.1
6,134,622	+		PP_5382	0.52	-0.7
6,134,622	+		PP_5382	0.52	+1.2
6,134,623	-		PP_5382	0.53	-2.3
6,134,623	-		PP_5382	0.53	-2.7
6,134,698	+		PP_5382	0.73	+0.1
6,134,699	-		PP_5382	0.74	-2.6
6,134,707	+		PP_5382	0.76	-1.3
6,134,708	-		PP_5382	0.76	-4.1
6,134,708	-		PP_5382	0.76	+0.4
6,134,829	-				-0.1
6,134,874	+				+2.7
6,134,875	-				-3.3
6,134,902	+				-0.6
6,134,911	+				+0.0
6,134,911	+				+1.6
6,134,911	+				+1.1
6,134,911	+				-2.0
6,134,911	+				-2.2
6,134,912	-				-0.5
6,134,912	-				+0.7
6,134,912	-				-2.4
6,134,912	-				-2.3
6,134,918	-				-3.2
6,134,934	-				+1.4
6,134,964	+				+3.3
6,134,964	+				-0.5
6,134,964	+				+0.9
6,134,964	+				-0.6
6,134,965	-				-0.4
6,134,965	-				-0.6
6,134,965	-				-1.9
6,134,965	-				+1.4
6,134,965	-				-1.5
6,134,965	-				-0.7
6,134,965	-				+0.9
6,134,993	+				-0.4
6,134,994	-				+1.2
6,134,999	+				-0.1
6,134,999	+				-0.6
6,134,999	+				+0.5
6,134,999	+				-3.3
6,134,999	+				-1.7
6,134,999	+				-3.8
6,134,999	+				-2.3
6,135,000	-				+0.7
6,135,028	+				-2.0
6,135,028	+				+2.8
6,135,029	-				+0.6
6,135,029	-				+1.5
6,135,029	-				-1.5
6,135,029	-				+1.3
6,135,029	-				-3.1
6,135,032	+				-2.2
6,135,033	-				+0.6
6,135,033	-				-3.0
6,135,118	+		PP_5383	0.19	-0.3
6,135,118	+		PP_5383	0.19	+0.3
6,135,155	+		PP_5383	0.25	+2.8
6,135,156	-		PP_5383	0.25	-0.4
6,135,210	-		PP_5383	0.33	+0.6
6,135,236	+		PP_5383	0.37	-3.5
6,135,237	-		PP_5383	0.37	-1.3
6,135,277	+		PP_5383	0.43	-0.8
6,135,277	+		PP_5383	0.43	+1.0
6,135,278	-		PP_5383	0.43	-0.8
6,135,308	+		PP_5383	0.47	-0.4
6,135,308	+		PP_5383	0.47	+0.8
6,135,308	+		PP_5383	0.47	-2.5
6,135,389	+		PP_5383	0.59	+1.0
6,135,389	+		PP_5383	0.59	-0.4
6,135,609	+				+0.0
6,135,609	+				-0.4
6,135,610	-				+2.4
6,135,640	+				+0.8
6,135,640	+				-0.5
6,135,641	-				-2.8
6,135,641	-				+0.4