Strain Fitness in Pseudomonas putida KT2440 around PP_5297

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
6,042,767	+		PP_5295	0.74	-0.5
6,042,767	+		PP_5295	0.74	-0.6
6,042,971	+				+3.6
6,042,971	+				-0.7
6,042,971	+				+2.0
6,042,998	+				-2.4
6,042,998	+				-0.5
6,042,998	+				-0.5
6,042,998	+				+1.6
6,043,683	+				-0.2
6,043,684	-				-3.4
6,043,684	-				-1.1
6,043,684	-				+0.6
6,043,703	-				+0.9
6,043,703	-				+1.5
6,043,703	-				-0.2
6,043,703	-				-1.0
6,043,735	-				-0.6
6,043,897	+		PP_5297	0.13	+1.8
6,043,897	+		PP_5297	0.13	+0.8
6,043,897	+		PP_5297	0.13	+0.1
6,043,897	+		PP_5297	0.13	-1.5
6,043,897	+		PP_5297	0.13	+0.6
6,043,897	+		PP_5297	0.13	+0.2
6,043,898	-		PP_5297	0.13	-1.6
6,043,898	-		PP_5297	0.13	+1.4
6,043,898	-		PP_5297	0.13	-0.5
6,043,898	-		PP_5297	0.13	-0.9
6,043,898	-		PP_5297	0.13	-1.5
6,043,898	-		PP_5297	0.13	+0.1
6,043,898	-		PP_5297	0.13	-1.5
6,043,972	-		PP_5297	0.18	-0.9
6,044,001	+		PP_5297	0.20	+0.3
6,044,002	-		PP_5297	0.20	-2.4
6,044,005	-		PP_5297	0.20	+2.4
6,044,005	-		PP_5297	0.20	+1.6
6,044,038	+		PP_5297	0.22	+0.1
6,044,038	+		PP_5297	0.22	+0.4
6,044,039	-		PP_5297	0.22	+0.3
6,044,065	+		PP_5297	0.24	+1.6
6,044,066	-		PP_5297	0.24	+2.0
6,044,066	-		PP_5297	0.24	-1.9
6,044,066	-		PP_5297	0.24	-2.0
6,044,066	-		PP_5297	0.24	+2.4
6,044,079	+		PP_5297	0.25	+2.0
6,044,079	+		PP_5297	0.25	-0.5
6,044,079	+		PP_5297	0.25	+0.9
6,044,118	+		PP_5297	0.27	-3.6
6,044,118	+		PP_5297	0.27	-2.2
6,044,118	+		PP_5297	0.27	+1.3
6,044,175	+		PP_5297	0.31	-1.7
6,044,175	+		PP_5297	0.31	+3.0
6,044,176	-		PP_5297	0.31	+0.2
6,044,179	-		PP_5297	0.31	+1.4
6,044,397	+		PP_5297	0.44	-1.6
6,044,397	+		PP_5297	0.44	+1.1
6,044,428	+		PP_5297	0.46	+0.8
6,044,429	-		PP_5297	0.46	+1.7
6,044,670	+		PP_5297	0.61	+0.5
6,044,671	-		PP_5297	0.62	+0.5
6,044,671	-		PP_5297	0.62	+0.3
6,044,743	+		PP_5297	0.66	+0.4
6,044,743	+		PP_5297	0.66	+1.3
6,044,743	+		PP_5297	0.66	+2.3
6,044,743	+		PP_5297	0.66	-1.6
6,044,744	-		PP_5297	0.66	+0.5
6,044,818	-		PP_5297	0.71	+0.4
6,044,818	-		PP_5297	0.71	+0.0
6,044,932	+		PP_5297	0.78	+1.6
6,044,932	+		PP_5297	0.78	-2.9
6,044,932	+		PP_5297	0.78	+2.9
6,044,941	+		PP_5297	0.78	-2.6
6,044,941	+		PP_5297	0.78	+0.1
6,045,079	+		PP_5297	0.87	+1.2
6,045,079	+		PP_5297	0.87	+0.2
6,045,080	-		PP_5297	0.87	+1.7
6,045,081	+		PP_5297	0.87	-1.3
6,045,081	+		PP_5297	0.87	-0.5
6,045,214	-				+0.1
6,045,227	+				+0.9
6,045,227	+				+0.3
6,045,227	+				-1.1
6,045,227	+				+1.0
6,045,227	+				-2.2
6,045,228	-				+3.0
6,045,228	-				+0.0
6,045,228	-				+1.5
6,045,228	-				+0.2
6,045,228	-				-2.0
6,045,254	+				+0.7
6,045,254	+				-0.0
6,045,255	-				-1.3
6,045,268	+				+0.3
6,045,268	+				+0.5
6,045,268	+				+1.1
6,045,355	+				+0.9
6,045,375	-				+0.1
6,045,884	+		PP_5298	0.70	-1.0
6,045,884	+		PP_5298	0.70	-1.4
6,045,885	-		PP_5298	0.71	-2.5
6,045,885	-		PP_5298	0.71	-0.4
6,046,022	+		PP_5298	0.88	-0.7
6,046,022	+		PP_5298	0.88	-2.6
6,046,023	-		PP_5298	0.89	-1.9
6,046,023	-		PP_5298	0.89	-1.2
6,046,023	-		PP_5298	0.89	+1.2
6,046,057	+				+0.9
6,046,058	-				-0.5
6,046,058	-				+0.2
6,046,116	+				+1.0
6,046,117	-				-1.3
6,046,131	+				-0.9
6,046,132	-				-0.9
6,046,132	-				-0.7
6,046,132	-				-1.2
6,046,132	-				+1.7
6,046,140	+				+0.4
6,046,140	+				+0.6
6,046,140	+				+0.7
6,046,140	+				-1.5
6,046,204	+				-4.3
6,046,205	-				+1.5
6,046,205	-				+1.0
6,046,212	+				+0.0
6,046,212	+				+1.2
6,046,212	+				-0.0
6,046,213	-				-0.3
6,046,227	+				+0.6
6,046,227	+				+0.4
6,046,227	+				+0.8
6,046,228	-				+0.6
6,046,228	-				-2.1