Strain Fitness in Pseudomonas putida KT2440 around PP_5127

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,846,902	+				-1.8
5,846,902	+				-1.5
5,846,903	-				+1.1
5,846,981	+				-0.4
5,846,981	+		PP_5126	0.17	-1.6
5,846,981	+		PP_5126	0.17	+1.4
5,846,982	-		PP_5126	0.17	-0.1
5,847,044	+		PP_5126	0.24	+1.6
5,847,045	-		PP_5126	0.24	-2.8
5,847,133	+		PP_5126	0.34	-2.6
5,847,134	-		PP_5126	0.34	-0.8
5,847,134	-		PP_5126	0.34	-0.6
5,847,211	+		PP_5126	0.43	-0.5
5,847,212	-		PP_5126	0.43	+0.5
5,847,212	-		PP_5126	0.43	-2.0
5,847,212	-		PP_5126	0.43	+0.1
5,847,212	-		PP_5126	0.43	+2.7
5,847,212	-		PP_5126	0.43	+1.9
5,847,212	-		PP_5126	0.43	+0.2
5,847,235	+		PP_5126	0.46	+2.1
5,847,236	-		PP_5126	0.46	+0.6
5,847,293	+		PP_5126	0.52	-1.7
5,847,293	+		PP_5126	0.52	+1.5
5,847,293	+		PP_5126	0.52	+0.2
5,847,293	+		PP_5126	0.52	-2.8
5,847,294	-		PP_5126	0.53	+0.2
5,847,295	+		PP_5126	0.53	+0.5
5,847,295	+		PP_5126	0.53	+1.3
5,847,295	+		PP_5126	0.53	-0.2
5,847,296	-		PP_5126	0.53	+0.8
5,847,296	-		PP_5126	0.53	+2.2
5,847,296	-		PP_5126	0.53	+1.8
5,847,316	-		PP_5126	0.55	+0.4
5,847,323	+		PP_5126	0.56	+1.2
5,847,458	+		PP_5126	0.71	+0.2
5,847,459	-		PP_5126	0.71	+2.6
5,847,462	+		PP_5126	0.72	+1.1
5,847,463	-		PP_5126	0.72	-0.1
5,847,463	-		PP_5126	0.72	+0.9
5,847,463	-		PP_5126	0.72	+0.7
5,847,463	-		PP_5126	0.72	+0.8
5,847,463	-		PP_5126	0.72	+0.5
5,847,607	+		PP_5126	0.88	+0.8
5,847,607	+		PP_5126	0.88	+0.7
5,847,608	-		PP_5126	0.89	-1.0
5,847,608	-		PP_5126	0.89	+3.7
5,847,608	-		PP_5126	0.89	+0.7
5,847,608	-		PP_5126	0.89	+1.3
5,847,608	-		PP_5126	0.89	-1.8
5,847,608	-		PP_5126	0.89	+3.1
5,847,707	+				-0.2
5,847,707	+				+1.0
5,847,707	+				-0.5
5,847,707	+				+0.9
5,847,708	-				-0.8
5,847,708	-				+2.0
5,847,708	-				+3.2
5,847,708	-				-0.6
5,847,708	-				-0.1
5,847,739	-				+0.8
5,847,746	+				-2.3
5,847,747	-				-0.8
5,847,771	+				-0.2
5,847,772	-				-2.1
5,847,797	+				-0.2
5,847,797	+				+1.9
5,847,797	+				-1.5
5,847,797	+				-1.2
5,847,798	-				-1.8
5,847,798	-				-2.0
5,847,798	-				+0.4
5,847,799	+				+1.5
5,847,799	+				-1.6
5,847,800	-				-1.9
5,847,899	-				+0.2
5,847,899	-				+0.3
5,847,899	-				-2.6
5,848,080	-		PP_5127	0.21	+0.9
5,848,080	-		PP_5127	0.21	-3.4
5,848,136	-		PP_5127	0.26	+1.3
5,848,147	+		PP_5127	0.27	-2.4
5,848,339	+		PP_5127	0.43	-2.2
5,848,340	-		PP_5127	0.43	+0.7
5,848,354	+		PP_5127	0.44	-0.2
5,848,354	+		PP_5127	0.44	-2.0
5,848,445	-		PP_5127	0.51	-3.9
5,848,445	-		PP_5127	0.51	-1.4
5,848,445	-		PP_5127	0.51	-3.1
5,848,480	+		PP_5127	0.54	-0.2
5,848,499	+		PP_5127	0.56	-1.9
5,848,499	+		PP_5127	0.56	+0.6
5,848,517	-		PP_5127	0.57	-0.5
5,849,026	+				-2.0
5,849,026	+				-0.6
5,849,027	-				-2.5
5,849,027	-				+1.3
5,849,027	-				-2.6
5,849,118	+				+1.2
5,849,130	-				+0.7
5,849,158	+				-0.5
5,849,276	+				+0.1
5,849,276	-				+2.1
5,849,277	-				-1.8
5,849,570	-		PP_5128	0.15	-1.8
5,849,611	+		PP_5128	0.17	-2.2
5,849,612	-		PP_5128	0.17	-1.9
5,849,612	-		PP_5128	0.17	+0.4
5,849,612	-		PP_5128	0.17	-2.8
5,849,612	-		PP_5128	0.17	-0.1
5,849,649	+		PP_5128	0.19	-1.5
5,849,649	+		PP_5128	0.19	-2.9
5,849,650	-		PP_5128	0.19	-0.9
5,849,839	+		PP_5128	0.29	+0.6
5,850,001	-		PP_5128	0.38	-0.5
5,850,025	+		PP_5128	0.40	+1.2