Strain Fitness in Pseudomonas putida KT2440 around PP_5110

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,829,017	-				+1.2
5,829,017	-				+0.9
5,829,019	-				-0.1
5,829,096	+		PP_5109	0.13	-1.1
5,829,096	+		PP_5109	0.13	-3.1
5,829,186	+		PP_5109	0.22	-0.8
5,829,186	+		PP_5109	0.22	+0.7
5,829,186	+		PP_5109	0.22	+0.7
5,829,186	+		PP_5109	0.22	+0.6
5,829,187	-		PP_5109	0.22	-0.7
5,829,187	-		PP_5109	0.22	-0.2
5,829,201	+		PP_5109	0.23	+1.0
5,829,201	+		PP_5109	0.23	-1.7
5,829,201	+		PP_5109	0.23	+1.1
5,829,222	+		PP_5109	0.25	-3.0
5,829,223	-		PP_5109	0.25	-1.0
5,829,266	-		PP_5109	0.30	-1.7
5,829,305	+		PP_5109	0.33	-0.1
5,829,306	-		PP_5109	0.33	-2.2
5,829,309	-		PP_5109	0.34	-1.4
5,829,591	+		PP_5109	0.61	-2.1
5,829,591	+		PP_5109	0.61	+1.9
5,829,592	-		PP_5109	0.61	+0.2
5,829,592	-		PP_5109	0.61	+0.6
5,829,675	+		PP_5109	0.69	+0.2
5,829,973	+				-1.1
5,829,974	-				-0.1
5,829,974	-				-0.9
5,830,088	-		PP_5110	0.15	+1.2
5,830,283	-		PP_5110	0.44	+1.9