Strain Fitness in Pseudomonas putida KT2440 around PP_5089

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,812,887	+				+0.1
5,812,887	+				-0.1
5,812,887	+				-0.5
5,812,887	+				-1.8
5,812,888	-				+0.3
5,813,014	+				+1.1
5,814,814	+				-0.1
5,814,814	+				-0.9
5,815,281	-		PP_5090	0.66	-3.7
5,815,281	-		PP_5090	0.66	-3.8
5,815,329	+		PP_5090	0.73	-2.5
5,815,557	+				+0.5
5,815,557	+				+0.6
5,815,557	+				-2.3
5,815,557	+				+2.1
5,815,558	-				+1.3
5,815,558	-				+0.8
5,815,558	-				-1.8
5,815,559	+				+0.2
5,815,560	-				-0.0
5,815,560	-				-0.4
5,815,588	+				+0.5
5,815,588	+				+0.1
5,815,588	+				+3.4
5,815,588	+				-1.1
5,815,588	+				+0.3
5,815,589	-				-1.2
5,815,589	-				+0.6
5,815,662	+		PP_5091	0.13	+2.8
5,815,662	+		PP_5091	0.13	+1.3
5,815,662	+				+1.0
5,815,663	-		PP_5091	0.13	-0.5
5,815,701	+		PP_5091	0.22	+0.5
5,815,701	+		PP_5091	0.22	-0.3
5,815,702	-		PP_5091	0.23	+0.3
5,815,732	-		PP_5091	0.30	+2.3
5,815,788	+		PP_5091	0.43	+1.0
5,815,789	-		PP_5091	0.43	+0.9
5,815,789	-		PP_5091	0.43	+2.6
5,815,789	-		PP_5091	0.43	+1.9