Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5065 and PP_5066 are separated by 122 nucleotides PP_5066 and PP_5067 are separated by 35 nucleotides
PP_5065: PP_5065 - conserved protein of unknown function, at 5,777,424 to 5,779,574
_5065
PP_5066: PP_5066 - K(+)/H(+) antiporter NhaP2, at 5,779,697 to 5,781,490
_5066
PP_5067: PP_5067 - mechanosensitive channel protein, intermediate (smaller, MscS-like) conductance, K+ efflux, at 5,781,526 to 5,784,834
_5067
Position (kb) 5779
5780
5781
5782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5778.709 kb on + strand, within PP_5065 at 5778.709 kb on + strand, within PP_5065 at 5778.710 kb on - strand, within PP_5065 at 5778.710 kb on - strand, within PP_5065 at 5778.718 kb on - strand, within PP_5065 at 5778.744 kb on + strand, within PP_5065 at 5778.843 kb on + strand, within PP_5065 at 5778.874 kb on + strand, within PP_5065 at 5778.875 kb on - strand, within PP_5065 at 5778.875 kb on - strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.197 kb on + strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.237 kb on + strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.276 kb on + strand, within PP_5065 at 5779.276 kb on + strand, within PP_5065 at 5779.277 kb on - strand, within PP_5065 at 5779.430 kb on - strand at 5779.606 kb on + strand at 5779.606 kb on + strand at 5779.606 kb on + strand at 5779.607 kb on - strand at 5779.643 kb on + strand at 5779.644 kb on - strand at 5779.667 kb on - strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.692 kb on - strand at 5779.710 kb on + strand at 5779.740 kb on - strand at 5779.808 kb on - strand at 5779.808 kb on - strand at 5779.929 kb on - strand, within PP_5066 at 5780.389 kb on + strand, within PP_5066 at 5780.424 kb on + strand, within PP_5066 at 5780.442 kb on + strand, within PP_5066 at 5780.473 kb on + strand, within PP_5066 at 5780.492 kb on + strand, within PP_5066 at 5781.185 kb on - strand, within PP_5066 at 5781.185 kb on - strand, within PP_5066 at 5781.285 kb on - strand, within PP_5066 at 5781.363 kb on + strand at 5781.366 kb on + strand at 5781.489 kb on - strand at 5781.516 kb on + strand at 5781.517 kb on - strand at 5781.525 kb on + strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.541 kb on + strand at 5781.542 kb on - strand at 5782.372 kb on + strand, within PP_5067 at 5782.372 kb on + strand, within PP_5067 at 5782.398 kb on + strand, within PP_5067
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 5,778,709 + PP_5065 0.60 +3.4 5,778,709 + PP_5065 0.60 +0.5 5,778,710 - PP_5065 0.60 -1.1 5,778,710 - PP_5065 0.60 +3.0 5,778,718 - PP_5065 0.60 +1.1 5,778,744 + PP_5065 0.61 +2.9 5,778,843 + PP_5065 0.66 -0.8 5,778,874 + PP_5065 0.67 +0.6 5,778,875 - PP_5065 0.67 -0.9 5,778,875 - PP_5065 0.67 -0.8 5,779,114 + PP_5065 0.79 -1.3 5,779,114 + PP_5065 0.79 +0.7 5,779,114 + PP_5065 0.79 -0.1 5,779,115 - PP_5065 0.79 +0.2 5,779,115 - PP_5065 0.79 -0.6 5,779,115 - PP_5065 0.79 -0.7 5,779,115 - PP_5065 0.79 -1.6 5,779,115 - PP_5065 0.79 +0.3 5,779,115 - PP_5065 0.79 +0.9 5,779,197 + PP_5065 0.82 +2.7 5,779,198 - PP_5065 0.82 -1.3 5,779,198 - PP_5065 0.82 +0.8 5,779,198 - PP_5065 0.82 +2.4 5,779,237 + PP_5065 0.84 -2.1 5,779,265 - PP_5065 0.86 -0.7 5,779,265 - PP_5065 0.86 +0.9 5,779,265 - PP_5065 0.86 +0.6 5,779,276 + PP_5065 0.86 -0.5 5,779,276 + PP_5065 0.86 -3.7 5,779,277 - PP_5065 0.86 -0.1 5,779,430 - -2.1 5,779,606 + -0.4 5,779,606 + -1.7 5,779,606 + -2.9 5,779,607 - +0.7 5,779,643 + -0.1 5,779,644 - +1.2 5,779,667 - -1.0 5,779,691 + +0.6 5,779,691 + -0.9 5,779,691 + -3.1 5,779,691 + +0.8 5,779,692 - -2.6 5,779,710 + +1.6 5,779,740 - +1.9 5,779,808 - +0.5 5,779,808 - +0.5 5,779,929 - PP_5066 0.13 +5.1 5,780,389 + PP_5066 0.39 +0.3 5,780,424 + PP_5066 0.41 +0.4 5,780,442 + PP_5066 0.42 +1.2 5,780,473 + PP_5066 0.43 +0.8 5,780,492 + PP_5066 0.44 +3.3 5,781,185 - PP_5066 0.83 -1.4 5,781,185 - PP_5066 0.83 +0.2 5,781,285 - PP_5066 0.89 -1.4 5,781,363 + -1.5 5,781,366 + +1.1 5,781,489 - +1.6 5,781,516 + +2.2 5,781,517 - -2.3 5,781,525 + -2.2 5,781,526 - -2.1 5,781,526 - +0.6 5,781,526 - -3.3 5,781,526 - +1.5 5,781,541 + -0.2 5,781,542 - -4.3 5,782,372 + PP_5067 0.26 +0.5 5,782,372 + PP_5067 0.26 -2.1 5,782,398 + PP_5067 0.26 -0.4
Or see this region's nucleotide sequence