Strain Fitness in Pseudomonas putida KT2440 around PP_4983

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,675,203	+		PP_4981	0.69	-0.3
5,675,221	-		PP_4981	0.72	-1.3
5,675,373	+				+1.9
5,675,374	-				-0.9
5,675,615	+		PP_4982	0.41	+0.7
5,675,648	+		PP_4982	0.47	-1.9
5,675,649	-		PP_4982	0.47	-0.1
5,675,649	-		PP_4982	0.47	+0.9
5,675,649	-		PP_4982	0.47	+0.2
5,675,819	+		PP_4982	0.78	+0.7
5,675,819	+		PP_4982	0.78	+0.5
5,675,823	-		PP_4982	0.79	-1.1
5,675,964	+				-1.0
5,675,964	+				+2.9
5,675,964	+				+0.9
5,675,965	-				+0.6
5,675,965	-				-0.7
5,675,987	+				-1.9
5,676,047	+				+0.2
5,676,048	-				-0.2
5,676,048	-				-0.7
5,676,059	-				+1.5
5,676,069	+				+0.7
5,676,070	-				+1.1
5,676,070	-				+0.8
5,676,087	+				+0.8
5,676,240	+				-1.6
5,676,240	+				+0.3
5,676,541	-		PP_4983	0.21	+0.1
5,676,770	+		PP_4983	0.34	-0.7
5,676,770	+		PP_4983	0.34	-3.3
5,676,775	-		PP_4983	0.34	+1.6
5,676,795	-		PP_4983	0.35	-0.3
5,676,878	+		PP_4983	0.39	-2.1
5,677,034	+		PP_4983	0.48	-1.3
5,677,112	+		PP_4983	0.52	+0.6
5,677,112	+		PP_4983	0.52	-0.2
5,677,112	+		PP_4983	0.52	-0.9
5,677,112	+		PP_4983	0.52	-1.4
5,677,112	+		PP_4983	0.52	-2.8
5,677,113	-		PP_4983	0.52	-0.2
5,677,113	-		PP_4983	0.52	-3.6
5,677,113	-		PP_4983	0.52	-4.0
5,677,178	-		PP_4983	0.56	-0.8
5,677,208	+		PP_4983	0.57	+1.0
5,677,208	+		PP_4983	0.57	-2.3
5,677,209	-		PP_4983	0.57	-0.9
5,677,209	-		PP_4983	0.57	+0.5
5,677,209	-		PP_4983	0.57	-1.7
5,677,240	+		PP_4983	0.59	-3.5
5,677,240	+		PP_4983	0.59	-1.7
5,677,388	+		PP_4983	0.67	-0.8
5,677,413	-		PP_4983	0.68	-0.4
5,677,671	-		PP_4983	0.82	-1.3
5,677,671	-		PP_4983	0.82	+1.0
5,677,699	-		PP_4983	0.84	+0.8
5,677,748	+		PP_4983	0.86	-2.6
5,677,874	+				+1.1
5,677,969	+				+0.1
5,678,029	+				-1.8
5,678,071	+				-1.4
5,678,077	+				-2.2
5,678,077	+				-0.8
5,678,077	+				-1.2
5,678,077	+				-0.6
5,678,078	-				+0.7
5,678,134	+				+0.1
5,678,134	+				-1.3
5,678,147	-				+1.9
5,678,150	+				-2.1
5,678,150	+				+1.8
5,678,150	+				-0.8
5,678,150	+				-0.6
5,678,151	-				+0.9
5,678,151	-				-1.2
5,678,163	-				-1.7
5,678,329	+				+3.5
5,678,329	+				+0.8
5,678,330	-				-0.9
5,678,335	+				+1.0
5,678,336	-				+0.7
5,678,708	+		PP_4984	0.24	+0.2
5,678,763	-		PP_4984	0.28	+4.6
5,678,819	+		PP_4984	0.32	+0.8
5,678,820	-		PP_4984	0.32	+0.9
5,678,880	-		PP_4984	0.36	+3.6
5,678,880	-		PP_4984	0.36	+0.1