Strain Fitness in Pseudomonas putida KT2440 around PP_4979

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,670,780	-		PP_4978	0.26	-0.7
5,670,780	-		PP_4978	0.26	-0.0
5,670,928	+		PP_4978	0.40	-0.8
5,670,928	+		PP_4978	0.40	-0.5
5,671,067	-		PP_4978	0.53	+1.3
5,671,088	-		PP_4978	0.55	+2.1
5,671,168	+		PP_4978	0.62	-0.4
5,671,168	+		PP_4978	0.62	+0.2
5,671,315	+		PP_4978	0.75	-3.3
5,671,315	+		PP_4978	0.75	-3.1
5,671,315	+		PP_4978	0.75	-0.4
5,671,316	-		PP_4978	0.76	+0.5
5,671,316	-		PP_4978	0.76	-1.3
5,671,375	+		PP_4978	0.81	-3.1
5,671,375	+		PP_4978	0.81	+0.9
5,671,375	+		PP_4978	0.81	+0.6
5,671,376	-		PP_4978	0.81	+0.2
5,671,376	-		PP_4978	0.81	+1.6
5,671,384	+		PP_4978	0.82	+0.1
5,671,462	+		PP_4978	0.89	-2.8
5,671,515	-				-1.2
5,671,718	-				+1.0
5,671,740	-				+0.3
5,671,759	+				+2.3
5,671,759	+				+0.1
5,671,853	+		PP_4979	0.13	+1.2
5,671,853	+		PP_4979	0.13	+0.4
5,671,853	+		PP_4979	0.13	+2.0
5,671,853	+		PP_4979	0.13	+0.4
5,671,854	-		PP_4979	0.13	+1.0
5,671,854	-		PP_4979	0.13	-0.5
5,671,854	-		PP_4979	0.13	+0.7
5,671,893	-		PP_4979	0.18	+0.6
5,671,893	-		PP_4979	0.18	+3.2
5,672,036	+		PP_4979	0.36	+1.8
5,672,037	-		PP_4979	0.36	+0.4
5,672,045	+		PP_4979	0.37	-2.6
5,672,045	+		PP_4979	0.37	-2.5
5,672,045	+		PP_4979	0.37	+1.8
5,672,045	+		PP_4979	0.37	-0.3
5,672,046	-		PP_4979	0.37	-3.4
5,672,046	-		PP_4979	0.37	+1.2
5,672,046	-		PP_4979	0.37	+0.9
5,672,218	+		PP_4979	0.59	+0.8
5,672,218	+		PP_4979	0.59	-1.7
5,672,218	+		PP_4979	0.59	+0.7
5,672,219	-		PP_4979	0.59	+1.2
5,672,219	-		PP_4979	0.59	+1.6
5,672,294	+		PP_4979	0.69	-2.1
5,672,295	-		PP_4979	0.69	-0.1
5,672,347	-		PP_4979	0.76	-0.2
5,672,367	-		PP_4979	0.78	+0.8
5,672,454	-		PP_4979	0.89	-2.5
5,672,474	+				+1.0
5,672,476	+				+0.8
5,672,476	+				-1.0
5,672,477	-				-1.3
5,672,546	+				-2.5
5,672,546	+				+1.4
5,672,549	-				-2.0
5,672,549	-				-0.7
5,672,818	+				+0.5
5,672,850	+				-1.1
5,672,851	-				+1.4
5,672,902	-				-0.1
5,672,907	+				+0.4
5,673,061	+		PP_4980	0.16	+0.8
5,673,061	+		PP_4980	0.16	+0.4
5,673,062	-		PP_4980	0.16	-3.1
5,673,440	+		PP_4980	0.36	-0.0
5,673,440	+		PP_4980	0.36	-0.5
5,673,442	+		PP_4980	0.36	-3.1
5,673,442	+		PP_4980	0.36	-2.7
5,673,443	-		PP_4980	0.36	+0.0
5,673,443	-		PP_4980	0.36	-0.1