Strain Fitness in Pseudomonas putida KT2440 around PP_4876

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,543,195	+		PP_4874	0.86	-3.3
5,543,409	+		PP_4875	0.15	-1.8
5,543,409	+		PP_4875	0.15	-3.0
5,543,409	+		PP_4875	0.15	-2.3
5,543,410	-		PP_4875	0.15	+0.3
5,543,410	-		PP_4875	0.15	-2.6
5,543,410	-		PP_4875	0.15	-2.6
5,543,410	-		PP_4875	0.15	-3.1
5,543,410	-		PP_4875	0.15	-0.8
5,543,410	-		PP_4875	0.15	-0.8
5,543,410	-		PP_4875	0.15	+1.2
5,543,410	-		PP_4875	0.15	-1.2
5,543,628	+		PP_4875	0.40	-1.1
5,543,647	-		PP_4875	0.43	-2.7
5,545,044	-				+1.2
5,545,047	+				-2.1
5,545,047	+				-1.8
5,545,047	+				-2.7
5,545,048	-				-2.7
5,545,048	-				+0.8
5,545,048	-				-1.8
5,545,048	-				-1.0