Strain Fitness in Pseudomonas putida KT2440 around PP_4855

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,521,127	+		PP_4854	0.30	+2.0
5,521,127	+		PP_4854	0.30	+2.1
5,521,130	+		PP_4854	0.31	-0.5
5,521,130	+		PP_4854	0.31	+2.5
5,521,130	+		PP_4854	0.31	-1.6
5,521,131	-		PP_4854	0.31	+0.3
5,521,131	-		PP_4854	0.31	+0.3
5,521,131	-		PP_4854	0.31	-3.1
5,521,131	-		PP_4854	0.31	+2.4
5,521,135	+		PP_4854	0.31	+0.3
5,521,136	-		PP_4854	0.31	-0.9
5,521,136	-		PP_4854	0.31	-2.1
5,521,136	-		PP_4854	0.31	-1.3
5,521,151	+		PP_4854	0.33	-0.1
5,521,255	+		PP_4854	0.44	+0.3
5,521,256	-		PP_4854	0.44	+0.2
5,521,515	+		PP_4854	0.71	-0.2
5,521,515	+		PP_4854	0.71	+1.7
5,521,515	+		PP_4854	0.71	+1.7
5,521,515	+		PP_4854	0.71	+0.6
5,521,516	-		PP_4854	0.72	+1.3
5,521,561	+		PP_4854	0.76	+0.9
5,521,561	+		PP_4854	0.76	+2.0
5,521,562	-		PP_4854	0.76	+1.3
5,521,562	-		PP_4854	0.76	+0.2
5,521,646	+		PP_4854	0.85	+0.7
5,521,652	+		PP_4854	0.86	+1.9
5,521,653	-		PP_4854	0.86	+0.9
5,521,653	-		PP_4854	0.86	+2.4
5,521,653	-		PP_4854	0.86	+1.7
5,521,765	+				+2.3
5,521,766	-				+0.3
5,521,855	+				-0.8
5,521,855	+				+3.2
5,521,855	+				-0.2
5,521,855	+				+0.1
5,521,856	-				-0.3
5,521,856	-				-1.8
5,521,856	-				+0.7
5,521,933	+		PP_4855	0.24	-0.2
5,521,934	-		PP_4855	0.24	-0.3
5,521,934	-		PP_4855	0.24	+2.0
5,521,980	+		PP_4855	0.37	+0.7
5,521,981	-		PP_4855	0.38	+0.2
5,522,062	+		PP_4855	0.61	-1.0
5,522,062	+		PP_4855	0.61	+1.7
5,522,062	+		PP_4855	0.61	-2.4
5,522,063	-		PP_4855	0.62	+1.1
5,522,095	+		PP_4855	0.71	+0.2
5,522,098	+		PP_4855	0.72	-1.2
5,522,099	-		PP_4855	0.72	-0.1
5,522,099	-		PP_4855	0.72	-2.4
5,522,099	-		PP_4855	0.72	+1.0
5,522,099	-		PP_4855	0.72	-1.7
5,522,099	-		PP_4855	0.72	-3.2
5,522,099	-		PP_4855	0.72	+0.5
5,522,191	+				+2.3
5,522,231	+				-1.7
5,522,231	+				+2.6
5,522,320	+		PP_4856	0.12	+0.7
5,522,355	+		PP_4856	0.19	+0.9
5,522,355	+		PP_4856	0.19	-1.4
5,522,395	+		PP_4856	0.27	-0.9
5,522,395	+		PP_4856	0.27	+2.0
5,522,395	+		PP_4856	0.27	+2.5
5,522,395	+		PP_4856	0.27	+0.1
5,522,396	-		PP_4856	0.27	-2.0
5,522,396	-		PP_4856	0.27	+1.8
5,522,396	-		PP_4856	0.27	+0.3
5,522,407	+		PP_4856	0.29	-1.0
5,522,407	+		PP_4856	0.29	-1.5
5,522,572	+		PP_4856	0.62	-0.2
5,522,572	+		PP_4856	0.62	-2.6
5,522,573	-		PP_4856	0.62	+0.4
5,522,662	+		PP_4856	0.79	-0.5
5,522,662	+		PP_4856	0.79	-1.9
5,522,662	+		PP_4856	0.79	+0.4
5,522,663	-		PP_4856	0.79	-1.1
5,522,739	+				-0.1
5,522,739	+				+1.6
5,522,740	-				-2.1
5,522,740	-				+1.3
5,522,740	-				+2.0
5,522,808	-				-1.8
5,523,026	+		PP_4857	0.11	-0.8
5,523,027	-		PP_4857	0.11	-2.4
5,523,027	-		PP_4857	0.11	-1.1
5,523,125	+		PP_4857	0.15	+0.6
5,523,126	-		PP_4857	0.15	+0.5
5,523,126	-		PP_4857	0.15	+1.6
5,523,165	+		PP_4857	0.17	+0.1