Strain Fitness in Pseudomonas putida KT2440 around PP_4854

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,519,877	+				+0.6
5,519,877	+				-3.5
5,519,944	+				-1.3
5,519,945	-				+0.5
5,519,961	+				+0.7
5,519,961	+				+1.2
5,519,961	+				+0.4
5,520,057	+		PP_4853	0.12	-0.4
5,520,058	-		PP_4853	0.12	+0.6
5,520,058	-		PP_4853	0.12	-1.2
5,520,058	-		PP_4853	0.12	-2.7
5,520,183	+		PP_4853	0.26	+0.5
5,520,183	+		PP_4853	0.26	+0.3
5,520,198	+		PP_4853	0.28	+1.6
5,520,306	+		PP_4853	0.40	-1.3
5,520,306	+		PP_4853	0.40	+1.5
5,520,307	-		PP_4853	0.40	+1.3
5,520,307	-		PP_4853	0.40	+0.1
5,520,307	-		PP_4853	0.40	-0.7
5,520,307	-		PP_4853	0.40	-2.1
5,520,439	-		PP_4853	0.55	+0.3
5,520,439	-		PP_4853	0.55	-1.0
5,520,447	+		PP_4853	0.56	+0.6
5,520,448	-		PP_4853	0.56	-1.9
5,520,448	-		PP_4853	0.56	+1.2
5,520,448	-		PP_4853	0.56	-1.4
5,520,448	-		PP_4853	0.56	-0.4
5,520,501	+		PP_4853	0.62	-2.5
5,520,501	+		PP_4853	0.62	+1.0
5,520,502	-		PP_4853	0.62	-1.0
5,520,597	+		PP_4853	0.73	+0.9
5,520,597	+		PP_4853	0.73	-0.1
5,520,597	+		PP_4853	0.73	-1.4
5,520,597	+		PP_4853	0.73	-3.7
5,520,597	+		PP_4853	0.73	-1.1
5,520,598	-		PP_4853	0.73	+0.2
5,520,598	-		PP_4853	0.73	-0.8
5,520,607	+		PP_4853	0.74	+0.2
5,520,751	-				-0.1
5,520,787	+				+0.9
5,520,787	+				+1.4
5,520,788	+				-2.8
5,520,788	-				-0.4
5,520,788	-				-1.6
5,520,840	-				+0.5
5,521,127	+		PP_4854	0.30	+2.0
5,521,127	+		PP_4854	0.30	+2.1
5,521,130	+		PP_4854	0.31	-0.5
5,521,130	+		PP_4854	0.31	+2.5
5,521,130	+		PP_4854	0.31	-1.6
5,521,131	-		PP_4854	0.31	+0.3
5,521,131	-		PP_4854	0.31	+0.3
5,521,131	-		PP_4854	0.31	-3.1
5,521,131	-		PP_4854	0.31	+2.4
5,521,135	+		PP_4854	0.31	+0.3
5,521,136	-		PP_4854	0.31	-0.9
5,521,136	-		PP_4854	0.31	-2.1
5,521,136	-		PP_4854	0.31	-1.3
5,521,151	+		PP_4854	0.33	-0.1
5,521,255	+		PP_4854	0.44	+0.3
5,521,256	-		PP_4854	0.44	+0.2
5,521,515	+		PP_4854	0.71	-0.2
5,521,515	+		PP_4854	0.71	+1.7
5,521,515	+		PP_4854	0.71	+1.7
5,521,515	+		PP_4854	0.71	+0.6
5,521,516	-		PP_4854	0.72	+1.3
5,521,561	+		PP_4854	0.76	+0.9
5,521,561	+		PP_4854	0.76	+2.0
5,521,562	-		PP_4854	0.76	+1.3
5,521,562	-		PP_4854	0.76	+0.2
5,521,646	+		PP_4854	0.85	+0.7
5,521,652	+		PP_4854	0.86	+1.9
5,521,653	-		PP_4854	0.86	+0.9
5,521,653	-		PP_4854	0.86	+2.4
5,521,653	-		PP_4854	0.86	+1.7
5,521,765	+				+2.3
5,521,766	-				+0.3
5,521,855	+				-0.8
5,521,855	+				+3.2
5,521,855	+				-0.2
5,521,855	+				+0.1
5,521,856	-				-0.3
5,521,856	-				-1.8
5,521,856	-				+0.7
5,521,933	+		PP_4855	0.24	-0.2
5,521,934	-		PP_4855	0.24	-0.3
5,521,934	-		PP_4855	0.24	+2.0
5,521,980	+		PP_4855	0.37	+0.7
5,521,981	-		PP_4855	0.38	+0.2
5,522,062	+		PP_4855	0.61	-1.0
5,522,062	+		PP_4855	0.61	+1.7
5,522,062	+		PP_4855	0.61	-2.4
5,522,063	-		PP_4855	0.62	+1.1
5,522,095	+		PP_4855	0.71	+0.2
5,522,098	+		PP_4855	0.72	-1.2
5,522,099	-		PP_4855	0.72	-0.1
5,522,099	-		PP_4855	0.72	-2.4
5,522,099	-		PP_4855	0.72	+1.0
5,522,099	-		PP_4855	0.72	-1.7
5,522,099	-		PP_4855	0.72	-3.2
5,522,099	-		PP_4855	0.72	+0.5
5,522,191	+				+2.3
5,522,231	+				-1.7
5,522,231	+				+2.6
5,522,320	+		PP_4856	0.12	+0.7
5,522,355	+		PP_4856	0.19	+0.9
5,522,355	+		PP_4856	0.19	-1.4
5,522,395	+		PP_4856	0.27	-0.9
5,522,395	+		PP_4856	0.27	+2.0
5,522,395	+		PP_4856	0.27	+2.5
5,522,395	+		PP_4856	0.27	+0.1
5,522,396	-		PP_4856	0.27	-2.0
5,522,396	-		PP_4856	0.27	+1.8
5,522,396	-		PP_4856	0.27	+0.3
5,522,407	+		PP_4856	0.29	-1.0
5,522,407	+		PP_4856	0.29	-1.5
5,522,572	+		PP_4856	0.62	-0.2
5,522,572	+		PP_4856	0.62	-2.6
5,522,573	-		PP_4856	0.62	+0.4
5,522,662	+		PP_4856	0.79	-0.5
5,522,662	+		PP_4856	0.79	-1.9
5,522,662	+		PP_4856	0.79	+0.4
5,522,663	-		PP_4856	0.79	-1.1
5,522,739	+				-0.1
5,522,739	+				+1.6
5,522,740	-				-2.1
5,522,740	-				+1.3
5,522,740	-				+2.0