Strain Fitness in Pseudomonas putida KT2440 around PP_4852

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,518,171	+		PP_4850	0.62	+0.1
5,518,171	+		PP_4850	0.62	+1.1
5,518,520	+				+1.6
5,518,520	+				-0.4
5,518,521	-				-0.2
5,518,580	+				-0.2
5,518,928	+				+2.1
5,518,928	+				+2.3
5,518,983	-				+0.6
5,519,182	-		PP_4852	0.31	-1.0
5,519,322	+		PP_4852	0.48	+1.1
5,519,328	+				+0.8
5,519,467	+		PP_4852	0.67	+0.9
5,519,467	+		PP_4852	0.67	+0.4
5,519,468	-		PP_4852	0.67	+0.3
5,519,471	+		PP_4852	0.67	-1.0
5,519,471	+		PP_4852	0.67	+1.4
5,519,471	+		PP_4852	0.67	-1.5
5,519,471	+		PP_4852	0.67	-0.7
5,519,472	-		PP_4852	0.67	+0.5
5,519,472	-		PP_4852	0.67	-1.3
5,519,472	-		PP_4852	0.67	+2.8
5,519,472	-		PP_4852	0.67	+3.1
5,519,472	-		PP_4852	0.67	+2.1
5,519,472	-		PP_4852	0.67	+0.5
5,519,472	-		PP_4852	0.67	-1.1
5,519,472	-		PP_4852	0.67	-2.7
5,519,480	-		PP_4852	0.68	+1.2
5,519,500	+		PP_4852	0.71	-0.2
5,519,500	+		PP_4852	0.71	-1.3
5,519,501	-		PP_4852	0.71	-1.9
5,519,501	-		PP_4852	0.71	-0.0
5,519,501	-		PP_4852	0.71	+0.5
5,519,501	-		PP_4852	0.71	-0.4
5,519,501	-		PP_4852	0.71	+1.6
5,519,501	-		PP_4852	0.71	+1.5
5,519,603	-		PP_4852	0.84	+1.4
5,519,603	-		PP_4852	0.84	+1.1
5,519,675	-				-1.3
5,519,717	-				+0.2
5,519,717	-				-3.5
5,519,717	-				-1.5
5,519,717	-				+1.1
5,519,721	-				-1.7
5,519,762	-				+0.4
5,519,767	+				+1.9
5,519,768	-				+1.4
5,519,768	-				+1.7
5,519,769	+				+0.6
5,519,792	+				+0.8
5,519,792	+				+0.3
5,519,796	-				-0.6
5,519,877	+				+0.6
5,519,877	+				-3.5
5,519,944	+				-1.3
5,519,945	-				+0.5
5,519,961	+				+0.7
5,519,961	+				+1.2
5,519,961	+				+0.4
5,520,057	+		PP_4853	0.12	-0.4
5,520,058	-		PP_4853	0.12	+0.6
5,520,058	-		PP_4853	0.12	-1.2
5,520,058	-		PP_4853	0.12	-2.7
5,520,183	+		PP_4853	0.26	+0.5
5,520,183	+		PP_4853	0.26	+0.3
5,520,198	+		PP_4853	0.28	+1.6
5,520,306	+		PP_4853	0.40	-1.3
5,520,306	+		PP_4853	0.40	+1.5
5,520,307	-		PP_4853	0.40	+1.3
5,520,307	-		PP_4853	0.40	+0.1
5,520,307	-		PP_4853	0.40	-0.7
5,520,307	-		PP_4853	0.40	-2.1
5,520,439	-		PP_4853	0.55	+0.3
5,520,439	-		PP_4853	0.55	-1.0
5,520,447	+		PP_4853	0.56	+0.6
5,520,448	-		PP_4853	0.56	-1.9
5,520,448	-		PP_4853	0.56	+1.2
5,520,448	-		PP_4853	0.56	-1.4
5,520,448	-		PP_4853	0.56	-0.4
5,520,501	+		PP_4853	0.62	-2.5
5,520,501	+		PP_4853	0.62	+1.0
5,520,502	-		PP_4853	0.62	-1.0
5,520,597	+		PP_4853	0.73	+0.9
5,520,597	+		PP_4853	0.73	-0.1
5,520,597	+		PP_4853	0.73	-1.4
5,520,597	+		PP_4853	0.73	-3.7
5,520,597	+		PP_4853	0.73	-1.1
5,520,598	-		PP_4853	0.73	+0.2
5,520,598	-		PP_4853	0.73	-0.8
5,520,607	+		PP_4853	0.74	+0.2