Strain Fitness in Pseudomonas putida KT2440 around PP_4815

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,477,076	+				-0.0
5,477,076	+				-0.6
5,477,077	-				-0.5
5,477,077	-				-0.3
5,477,077	-				-0.0
5,477,082	+				-2.7
5,477,083	-				-1.3
5,477,083	-				+1.8
5,477,083	-				-2.0
5,477,106	-				+0.5
5,477,116	-				+1.9
5,477,128	-				+1.8
5,477,145	+				-0.9
5,477,151	-				-1.7
5,477,151	-				+0.5
5,477,190	-				+0.8
5,477,190	-				-0.9
5,477,317	+		PP_4814	0.20	-2.2
5,477,418	+		PP_4814	0.37	-2.8
5,477,419	-		PP_4814	0.37	-0.2
5,477,419	-		PP_4814	0.37	-0.1
5,477,762	+				-0.3
5,477,841	-				-0.5
5,478,023	+		PP_4815	0.31	-0.0
5,478,204	-		PP_4815	0.56	+1.5
5,478,204	-		PP_4815	0.56	+2.3
5,478,207	-		PP_4815	0.57	+0.1
5,478,207	-		PP_4815	0.57	+0.8
5,478,212	+		PP_4815	0.58	-1.3
5,478,213	-		PP_4815	0.58	-0.3
5,478,245	+		PP_4815	0.62	+1.0
5,478,250	+		PP_4815	0.63	+2.2
5,478,251	-		PP_4815	0.63	+1.1
5,478,375	+		PP_4815	0.80	-0.6
5,478,381	+		PP_4815	0.81	+1.4
5,478,416	-		PP_4815	0.86	+2.1
5,478,429	+		PP_4815	0.88	+0.2
5,478,429	+		PP_4815	0.88	+2.1
5,478,430	-		PP_4815	0.88	+1.8
5,478,436	+		PP_4815	0.89	+3.8
5,478,436	+		PP_4815	0.89	+0.3
5,478,648	+		PP_4816	0.37	+1.5
5,478,648	+		PP_4816	0.37	-0.9
5,478,648	+		PP_4816	0.37	-3.4
5,478,648	+		PP_4816	0.37	+1.1
5,478,649	-		PP_4816	0.37	-1.7
5,478,649	-		PP_4816	0.37	+2.0
5,478,649	-		PP_4816	0.37	+2.1
5,478,650	+		PP_4816	0.37	-1.5
5,478,650	+		PP_4816	0.37	-0.7
5,478,650	+		PP_4816	0.37	+1.1
5,478,650	+		PP_4816	0.37	-1.8
5,478,650	+		PP_4816	0.37	+1.0
5,478,650	+		PP_4816	0.37	-1.0
5,478,651	-		PP_4816	0.38	-3.0
5,478,651	-		PP_4816	0.38	+2.4
5,478,651	-		PP_4816	0.38	+0.4
5,478,794	+		PP_4816	0.76	+0.9
5,478,874	+				+0.2
5,478,874	+				+1.0
5,478,874	+				+1.1
5,478,874	+				+0.5
5,478,874	+				-1.4
5,478,874	+				-1.4
5,478,875	-				+0.2
5,478,875	-				-1.9
5,478,875	-				+0.2
5,478,875	-				+1.3
5,478,903	+				-1.9
5,478,903	+				+2.1
5,478,903	+				-1.2
5,478,904	-				+0.6
5,478,904	-				+1.5
5,478,904	-				-0.7
5,478,905	+				+2.6
5,478,905	+				-1.2
5,478,905	+				+1.1
5,478,905	+				+3.2
5,478,906	-				-0.1
5,478,906	-				-0.1
5,478,906	-				-2.3
5,478,906	-				+0.1
5,478,906	-				-1.9
5,478,906	-				+1.5
5,478,906	-				-0.6
5,478,982	+				-0.8
5,478,991	-				-1.4
5,479,028	+				-1.2
5,479,029	-				-0.9
5,479,029	-				+0.6
5,479,035	+				+0.7
5,479,051	+				+1.3
5,479,052	-				-2.2
5,479,282	+		PP_4817	0.58	+0.7
5,479,283	-		PP_4817	0.58	-1.2
5,479,346	+		PP_4817	0.72	-0.3
5,479,346	+		PP_4817	0.72	-0.3
5,479,347	-		PP_4817	0.72	+1.0
5,479,347	-		PP_4817	0.72	-1.8
5,479,347	-		PP_4817	0.72	-1.7
5,479,438	+				+0.8
5,479,438	+				+1.0
5,479,438	+				+1.2
5,479,438	+				+1.9
5,479,438	+				+0.3
5,479,438	+				+0.3
5,479,439	-				+1.0
5,479,439	-				+1.6
5,479,439	-				+0.6
5,479,439	-				-2.6
5,479,439	-				+1.3
5,479,439	-				+1.4
5,479,439	-				-1.3
5,479,439	-				+1.0
5,479,439	-				+0.3
5,479,440	+				-1.2
5,479,440	+				+0.6
5,479,440	+				-1.4
5,479,440	+				-1.5
5,479,441	-				-2.7
5,479,441	-				+0.6
5,479,442	+				-2.7
5,479,443	-				-3.4
5,479,443	-				+0.6
5,479,474	+				-0.6
5,479,474	+				+1.9
5,479,474	+				+0.2
5,479,475	-				-1.4
5,479,475	-				+0.6
5,479,475	-				-1.1
5,479,475	-				+1.4
5,479,475	-				-2.3
5,479,475	-				-0.6
5,479,475	-				+0.7