Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4688 and PP_4689 overlap by 4 nucleotides PP_4689 and PP_4690 are separated by 148 nucleotides PP_4690 and PP_4691 overlap by 38 nucleotides
PP_4688: PP_4688 - Heme/hemin ABC transporter, permease protein, at 5,327,301 to 5,328,338
_4688
PP_4689: PP_4689 - Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein, at 5,328,335 to 5,329,219
_4689
PP_4690: PP_4690 - Rieske 2Fe-2S family protein, at 5,329,368 to 5,329,712
_4690
PP_4691: PP_4691 - sugar fermentation stimulation protein A, at 5,329,675 to 5,330,388
_4691
Position (kb) 5328
5329
5330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5327.363 kb on + strand at 5327.363 kb on + strand at 5327.505 kb on + strand, within PP_4688 at 5327.703 kb on + strand, within PP_4688 at 5327.703 kb on + strand, within PP_4688 at 5327.722 kb on + strand at 5327.847 kb on + strand, within PP_4688 at 5327.847 kb on + strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.893 kb on + strand, within PP_4688 at 5327.908 kb on - strand, within PP_4688 at 5327.945 kb on + strand, within PP_4688 at 5327.947 kb on + strand, within PP_4688 at 5328.302 kb on + strand at 5328.303 kb on - strand at 5328.314 kb on + strand at 5328.314 kb on + strand at 5328.315 kb on - strand at 5328.315 kb on - strand at 5328.315 kb on - strand at 5328.600 kb on + strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.055 kb on - strand, within PP_4689 at 5329.279 kb on - strand at 5329.279 kb on - strand at 5329.279 kb on - strand at 5329.382 kb on + strand at 5329.383 kb on - strand at 5329.383 kb on - strand at 5329.383 kb on - strand at 5329.426 kb on + strand, within PP_4690 at 5329.427 kb on - strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.470 kb on + strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.471 kb on - strand, within PP_4690 at 5329.476 kb on + strand, within PP_4690 at 5329.716 kb on + strand at 5329.743 kb on - strand at 5329.853 kb on + strand, within PP_4691 at 5329.853 kb on + strand, within PP_4691 at 5329.854 kb on - strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.994 kb on + strand, within PP_4691 at 5329.995 kb on - strand, within PP_4691 at 5329.995 kb on - strand, within PP_4691 at 5330.052 kb on - strand, within PP_4691
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 5,327,363 + -3.3 5,327,363 + +0.3 5,327,505 + PP_4688 0.20 -1.1 5,327,703 + PP_4688 0.39 +1.3 5,327,703 + PP_4688 0.39 +1.2 5,327,722 + +1.3 5,327,847 + PP_4688 0.53 +0.4 5,327,847 + PP_4688 0.53 +1.3 5,327,848 - PP_4688 0.53 +1.9 5,327,848 - PP_4688 0.53 +0.5 5,327,848 - PP_4688 0.53 -0.4 5,327,848 - PP_4688 0.53 +0.5 5,327,893 + PP_4688 0.57 +2.1 5,327,908 - PP_4688 0.58 -0.8 5,327,945 + PP_4688 0.62 +1.3 5,327,947 + PP_4688 0.62 +0.1 5,328,302 + +0.5 5,328,303 - +2.6 5,328,314 + +0.4 5,328,314 + +2.4 5,328,315 - +0.5 5,328,315 - -0.7 5,328,315 - -3.3 5,328,600 + PP_4689 0.30 -1.8 5,328,601 - PP_4689 0.30 +1.7 5,328,601 - PP_4689 0.30 +3.0 5,328,601 - PP_4689 0.30 +1.5 5,328,601 - PP_4689 0.30 +0.6 5,329,054 + PP_4689 0.81 +0.3 5,329,054 + PP_4689 0.81 -0.3 5,329,054 + PP_4689 0.81 +1.9 5,329,054 + PP_4689 0.81 +1.2 5,329,054 + PP_4689 0.81 -0.5 5,329,055 - PP_4689 0.81 +0.7 5,329,279 - -1.3 5,329,279 - -1.3 5,329,279 - -0.6 5,329,382 + +0.3 5,329,383 - +0.4 5,329,383 - -2.1 5,329,383 - +1.4 5,329,426 + PP_4690 0.17 +1.1 5,329,427 - PP_4690 0.17 -0.2 5,329,470 + PP_4690 0.30 -2.8 5,329,470 + PP_4690 0.30 -2.6 5,329,470 + PP_4690 0.30 -0.6 5,329,471 - PP_4690 0.30 +1.5 5,329,471 - PP_4690 0.30 +0.6 5,329,471 - PP_4690 0.30 +1.0 5,329,476 + PP_4690 0.31 +0.1 5,329,716 + -1.0 5,329,743 - -0.5 5,329,853 + PP_4691 0.25 -1.0 5,329,853 + PP_4691 0.25 -1.3 5,329,854 - PP_4691 0.25 +1.1 5,329,994 + PP_4691 0.45 +1.1 5,329,994 + PP_4691 0.45 -1.6 5,329,994 + PP_4691 0.45 +0.2 5,329,995 - PP_4691 0.45 +0.8 5,329,995 - PP_4691 0.45 +0.1 5,330,052 - PP_4691 0.53 -0.5
Or see this region's nucleotide sequence