Strain Fitness in Pseudomonas putida KT2440 around PP_4639

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,262,305	+		PP_4638	0.32	+1.0
5,262,305	+		PP_4638	0.32	+1.1
5,262,305	+		PP_4638	0.32	+3.5
5,262,394	-		PP_4638	0.38	-0.3
5,262,394	-		PP_4638	0.38	+0.7
5,262,592	+		PP_4638	0.51	-0.2
5,262,598	+		PP_4638	0.52	-0.6
5,262,599	-		PP_4638	0.52	+0.7
5,262,683	+		PP_4638	0.57	+1.0
5,262,843	-		PP_4638	0.68	+0.1
5,263,040	+		PP_4638	0.81	-1.9
5,263,040	+		PP_4638	0.81	-3.2
5,263,040	+		PP_4638	0.81	+0.1
5,263,040	+		PP_4638	0.81	+0.5
5,263,040	+		PP_4638	0.81	-0.4
5,263,040	+		PP_4638	0.81	+1.6
5,263,040	+		PP_4638	0.81	-1.4
5,263,041	-		PP_4638	0.82	-2.3
5,263,041	-		PP_4638	0.82	+2.7
5,263,041	-		PP_4638	0.82	-3.0
5,263,041	-		PP_4638	0.82	+1.8
5,263,041	-		PP_4638	0.82	-3.2
5,263,041	-		PP_4638	0.82	+3.6
5,263,041	-		PP_4638	0.82	+0.4
5,263,041	-		PP_4638	0.82	+0.2
5,263,041	-		PP_4638	0.82	+1.6
5,263,042	+		PP_4638	0.82	+0.7
5,263,042	+		PP_4638	0.82	+0.4
5,263,042	+		PP_4638	0.82	+1.4
5,263,042	+		PP_4638	0.82	+0.6
5,263,043	-		PP_4638	0.82	+1.2
5,263,043	-		PP_4638	0.82	-2.7
5,263,043	-		PP_4638	0.82	-0.6
5,263,043	-		PP_4638	0.82	-0.4
5,263,400	-		PP_4639	0.13	+1.4
5,263,400	-		PP_4639	0.13	-0.1
5,263,465	+		PP_4639	0.20	-1.1
5,263,465	+		PP_4639	0.20	+0.2
5,263,465	+		PP_4639	0.20	+1.4
5,263,662	+		PP_4639	0.40	+1.1
5,263,715	+		PP_4639	0.45	+1.0
5,263,715	+		PP_4639	0.45	+1.4
5,263,716	-		PP_4639	0.45	+0.6
5,263,716	-		PP_4639	0.45	-1.3
5,263,716	-		PP_4639	0.45	-3.6
5,263,716	-		PP_4639	0.45	+1.3
5,263,888	+		PP_4639	0.63	+2.6
5,263,888	+		PP_4639	0.63	-1.4
5,263,888	+		PP_4639	0.63	+1.6
5,263,888	+		PP_4639	0.63	+1.1
5,263,888	+		PP_4639	0.63	+0.2
5,263,889	-		PP_4639	0.63	+0.7
5,263,889	-		PP_4639	0.63	-2.3
5,264,017	+		PP_4639	0.76	+1.8
5,264,018	-		PP_4639	0.76	-1.0
5,264,018	-		PP_4639	0.76	-2.4
5,264,018	-		PP_4639	0.76	+2.1
5,264,055	+		PP_4639	0.80	-0.5
5,264,055	+		PP_4639	0.80	+2.9
5,264,055	+		PP_4639	0.80	+1.3
5,264,055	+		PP_4639	0.80	+1.3
5,264,055	+		PP_4639	0.80	-4.1
5,264,056	-		PP_4639	0.80	-2.4
5,264,056	-		PP_4639	0.80	-2.1
5,264,056	-		PP_4639	0.80	+2.2
5,264,182	+				+0.9
5,264,182	+				-0.2
5,264,182	+				-0.5
5,264,183	-				-0.4
5,264,183	-				+2.3
5,264,183	-				+0.2
5,264,183	-				+1.0
5,264,183	-				+1.5
5,264,183	-				+0.6
5,264,314	+				-0.9
5,264,315	-				-0.7
5,264,361	+		PP_4640	0.16	+0.5
5,264,361	+		PP_4640	0.16	-0.2
5,264,397	+		PP_4640	0.34	+1.3
5,264,397	+		PP_4640	0.34	+0.7
5,264,397	+		PP_4640	0.34	-1.1
5,264,397	+		PP_4640	0.34	+1.2
5,264,398	-		PP_4640	0.34	+1.0
5,264,398	-		PP_4640	0.34	+0.0
5,264,445	+		PP_4640	0.58	+1.5
5,264,445	+		PP_4640	0.58	+0.3
5,264,445	+		PP_4640	0.58	-0.7
5,264,445	+		PP_4640	0.58	-2.1
5,264,445	+		PP_4640	0.58	-0.5
5,264,445	+		PP_4640	0.58	+1.1
5,264,446	-		PP_4640	0.59	-1.8
5,264,455	-		PP_4640	0.63	-3.0
5,264,497	-		PP_4640	0.84	-0.6
5,264,546	+				+1.8
5,264,687	+				+2.5
5,264,687	+				+2.0
5,264,741	-				+0.8
5,264,768	+		PP_4641	0.11	-0.1
5,264,768	+		PP_4641	0.11	+2.3
5,264,768	+		PP_4641	0.11	+0.3
5,264,769	-		PP_4641	0.11	+1.2
5,264,769	-		PP_4641	0.11	+1.5
5,264,857	+		PP_4641	0.15	-3.0
5,264,886	-		PP_4641	0.16	-1.1
5,264,886	-		PP_4641	0.16	-0.1
5,265,017	+		PP_4641	0.23	-0.5
5,265,017	+		PP_4641	0.23	-0.8
5,265,018	-		PP_4641	0.23	+0.6
5,265,026	+		PP_4641	0.23	+0.0
5,265,027	-		PP_4641	0.23	-2.3
5,265,204	-		PP_4641	0.32	+1.7