Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4638 and PP_4639 overlap by 41 nucleotides PP_4639 and PP_4640 are separated by 83 nucleotides PP_4640 and PP_4641 are separated by 17 nucleotides
PP_4638: PP_4638 - Methylenetetrahydrofolate reductase, at 5,261,828 to 5,263,315
_4638
PP_4639: PP_4639 - P-loop guanosine triphosphatase-dependent zinc chaperone, at 5,263,275 to 5,264,246
_4639
PP_4640: PP_4640 - conserved protein of unknown function, at 5,264,330 to 5,264,527
_4640
PP_4641: PP_4641 - putative transporter, at 5,264,545 to 5,266,611
_4641
Position (kb)
5263
5264
5265 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5262.305 kb on + strand, within PP_4638 at 5262.305 kb on + strand, within PP_4638 at 5262.305 kb on + strand, within PP_4638 at 5262.394 kb on - strand, within PP_4638 at 5262.394 kb on - strand, within PP_4638 at 5262.592 kb on + strand, within PP_4638 at 5262.598 kb on + strand, within PP_4638 at 5262.599 kb on - strand, within PP_4638 at 5262.683 kb on + strand, within PP_4638 at 5262.843 kb on - strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.040 kb on + strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.041 kb on - strand, within PP_4638 at 5263.042 kb on + strand, within PP_4638 at 5263.042 kb on + strand, within PP_4638 at 5263.042 kb on + strand, within PP_4638 at 5263.042 kb on + strand, within PP_4638 at 5263.043 kb on - strand, within PP_4638 at 5263.043 kb on - strand, within PP_4638 at 5263.043 kb on - strand, within PP_4638 at 5263.043 kb on - strand, within PP_4638 at 5263.400 kb on - strand, within PP_4639 at 5263.400 kb on - strand, within PP_4639 at 5263.465 kb on + strand, within PP_4639 at 5263.465 kb on + strand, within PP_4639 at 5263.465 kb on + strand, within PP_4639 at 5263.662 kb on + strand, within PP_4639 at 5263.715 kb on + strand, within PP_4639 at 5263.715 kb on + strand, within PP_4639 at 5263.716 kb on - strand, within PP_4639 at 5263.716 kb on - strand, within PP_4639 at 5263.716 kb on - strand, within PP_4639 at 5263.716 kb on - strand, within PP_4639 at 5263.888 kb on + strand, within PP_4639 at 5263.888 kb on + strand, within PP_4639 at 5263.888 kb on + strand, within PP_4639 at 5263.888 kb on + strand, within PP_4639 at 5263.888 kb on + strand, within PP_4639 at 5263.889 kb on - strand, within PP_4639 at 5263.889 kb on - strand, within PP_4639 at 5264.017 kb on + strand, within PP_4639 at 5264.018 kb on - strand, within PP_4639 at 5264.018 kb on - strand, within PP_4639 at 5264.018 kb on - strand, within PP_4639 at 5264.055 kb on + strand, within PP_4639 at 5264.055 kb on + strand, within PP_4639 at 5264.055 kb on + strand, within PP_4639 at 5264.055 kb on + strand, within PP_4639 at 5264.055 kb on + strand, within PP_4639 at 5264.056 kb on - strand, within PP_4639 at 5264.056 kb on - strand, within PP_4639 at 5264.056 kb on - strand, within PP_4639 at 5264.182 kb on + strand at 5264.182 kb on + strand at 5264.182 kb on + strand at 5264.183 kb on - strand at 5264.183 kb on - strand at 5264.183 kb on - strand at 5264.183 kb on - strand at 5264.183 kb on - strand at 5264.183 kb on - strand at 5264.314 kb on + strand at 5264.315 kb on - strand at 5264.361 kb on + strand, within PP_4640 at 5264.361 kb on + strand, within PP_4640 at 5264.397 kb on + strand, within PP_4640 at 5264.397 kb on + strand, within PP_4640 at 5264.397 kb on + strand, within PP_4640 at 5264.397 kb on + strand, within PP_4640 at 5264.398 kb on - strand, within PP_4640 at 5264.398 kb on - strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.445 kb on + strand, within PP_4640 at 5264.446 kb on - strand, within PP_4640 at 5264.455 kb on - strand, within PP_4640 at 5264.497 kb on - strand, within PP_4640 at 5264.546 kb on + strand at 5264.687 kb on + strand at 5264.687 kb on + strand at 5264.741 kb on - strand at 5264.768 kb on + strand, within PP_4641 at 5264.768 kb on + strand, within PP_4641 at 5264.768 kb on + strand, within PP_4641 at 5264.769 kb on - strand, within PP_4641 at 5264.769 kb on - strand, within PP_4641 at 5264.857 kb on + strand, within PP_4641 at 5264.886 kb on - strand, within PP_4641 at 5264.886 kb on - strand, within PP_4641 at 5265.017 kb on + strand, within PP_4641 at 5265.017 kb on + strand, within PP_4641 at 5265.018 kb on - strand, within PP_4641 at 5265.026 kb on + strand, within PP_4641 at 5265.027 kb on - strand, within PP_4641 at 5265.204 kb on - strand, within PP_4641
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 5,262,305 + PP_4638 0.32 +1.0 5,262,305 + PP_4638 0.32 +1.1 5,262,305 + PP_4638 0.32 +3.5 5,262,394 - PP_4638 0.38 -0.3 5,262,394 - PP_4638 0.38 +0.7 5,262,592 + PP_4638 0.51 -0.2 5,262,598 + PP_4638 0.52 -0.6 5,262,599 - PP_4638 0.52 +0.7 5,262,683 + PP_4638 0.57 +1.0 5,262,843 - PP_4638 0.68 +0.1 5,263,040 + PP_4638 0.81 -1.9 5,263,040 + PP_4638 0.81 -3.2 5,263,040 + PP_4638 0.81 +0.1 5,263,040 + PP_4638 0.81 +0.5 5,263,040 + PP_4638 0.81 -0.4 5,263,040 + PP_4638 0.81 +1.6 5,263,040 + PP_4638 0.81 -1.4 5,263,041 - PP_4638 0.82 -2.3 5,263,041 - PP_4638 0.82 +2.7 5,263,041 - PP_4638 0.82 -3.0 5,263,041 - PP_4638 0.82 +1.8 5,263,041 - PP_4638 0.82 -3.2 5,263,041 - PP_4638 0.82 +3.6 5,263,041 - PP_4638 0.82 +0.4 5,263,041 - PP_4638 0.82 +0.2 5,263,041 - PP_4638 0.82 +1.6 5,263,042 + PP_4638 0.82 +0.7 5,263,042 + PP_4638 0.82 +0.4 5,263,042 + PP_4638 0.82 +1.4 5,263,042 + PP_4638 0.82 +0.6 5,263,043 - PP_4638 0.82 +1.2 5,263,043 - PP_4638 0.82 -2.7 5,263,043 - PP_4638 0.82 -0.6 5,263,043 - PP_4638 0.82 -0.4 5,263,400 - PP_4639 0.13 +1.4 5,263,400 - PP_4639 0.13 -0.1 5,263,465 + PP_4639 0.20 -1.1 5,263,465 + PP_4639 0.20 +0.2 5,263,465 + PP_4639 0.20 +1.4 5,263,662 + PP_4639 0.40 +1.1 5,263,715 + PP_4639 0.45 +1.0 5,263,715 + PP_4639 0.45 +1.4 5,263,716 - PP_4639 0.45 +0.6 5,263,716 - PP_4639 0.45 -1.3 5,263,716 - PP_4639 0.45 -3.6 5,263,716 - PP_4639 0.45 +1.3 5,263,888 + PP_4639 0.63 +2.6 5,263,888 + PP_4639 0.63 -1.4 5,263,888 + PP_4639 0.63 +1.6 5,263,888 + PP_4639 0.63 +1.1 5,263,888 + PP_4639 0.63 +0.2 5,263,889 - PP_4639 0.63 +0.7 5,263,889 - PP_4639 0.63 -2.3 5,264,017 + PP_4639 0.76 +1.8 5,264,018 - PP_4639 0.76 -1.0 5,264,018 - PP_4639 0.76 -2.4 5,264,018 - PP_4639 0.76 +2.1 5,264,055 + PP_4639 0.80 -0.5 5,264,055 + PP_4639 0.80 +2.9 5,264,055 + PP_4639 0.80 +1.3 5,264,055 + PP_4639 0.80 +1.3 5,264,055 + PP_4639 0.80 -4.1 5,264,056 - PP_4639 0.80 -2.4 5,264,056 - PP_4639 0.80 -2.1 5,264,056 - PP_4639 0.80 +2.2 5,264,182 + +0.9 5,264,182 + -0.2 5,264,182 + -0.5 5,264,183 - -0.4 5,264,183 - +2.3 5,264,183 - +0.2 5,264,183 - +1.0 5,264,183 - +1.5 5,264,183 - +0.6 5,264,314 + -0.9 5,264,315 - -0.7 5,264,361 + PP_4640 0.16 +0.5 5,264,361 + PP_4640 0.16 -0.2 5,264,397 + PP_4640 0.34 +1.3 5,264,397 + PP_4640 0.34 +0.7 5,264,397 + PP_4640 0.34 -1.1 5,264,397 + PP_4640 0.34 +1.2 5,264,398 - PP_4640 0.34 +1.0 5,264,398 - PP_4640 0.34 +0.0 5,264,445 + PP_4640 0.58 +1.5 5,264,445 + PP_4640 0.58 +0.3 5,264,445 + PP_4640 0.58 -0.7 5,264,445 + PP_4640 0.58 -2.1 5,264,445 + PP_4640 0.58 -0.5 5,264,445 + PP_4640 0.58 +1.1 5,264,446 - PP_4640 0.59 -1.8 5,264,455 - PP_4640 0.63 -3.0 5,264,497 - PP_4640 0.84 -0.6 5,264,546 + +1.8 5,264,687 + +2.5 5,264,687 + +2.0 5,264,741 - +0.8 5,264,768 + PP_4641 0.11 -0.1 5,264,768 + PP_4641 0.11 +2.3 5,264,768 + PP_4641 0.11 +0.3 5,264,769 - PP_4641 0.11 +1.2 5,264,769 - PP_4641 0.11 +1.5 5,264,857 + PP_4641 0.15 -3.0 5,264,886 - PP_4641 0.16 -1.1 5,264,886 - PP_4641 0.16 -0.1 5,265,017 + PP_4641 0.23 -0.5 5,265,017 + PP_4641 0.23 -0.8 5,265,018 - PP_4641 0.23 +0.6 5,265,026 + PP_4641 0.23 +0.0 5,265,027 - PP_4641 0.23 -2.3 5,265,204 - PP_4641 0.32 +1.7
Or see this region's nucleotide sequence