Strain Fitness in Pseudomonas putida KT2440 around PP_4620

Experiment: Tetrahymena sp., Mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4618 and PP_4619 overlap by 7 nucleotidesPP_4619 and PP_4620 are separated by 12 nucleotidesPP_4620 and PP_4621 are separated by 3 nucleotides PP_4618: PP_4618 - conserved protein of unknown function, at 5,240,439 to 5,241,245 _4618 PP_4619: PP_4619 - Maleylacetoacetate isomerase, at 5,241,239 to 5,241,871 _4619 PP_4620: PP_4620 - Fumarylacetoacetase, at 5,241,884 to 5,243,176 _4620 PP_4621: PP_4621 - Homogentisate 1,2-dioxygenase, at 5,243,180 to 5,244,481 _4621 Position (kb) 5241 5242 5243 5244Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5241.015 kb on - strand, within PP_4618at 5241.087 kb on + strand, within PP_4618at 5241.109 kb on - strand, within PP_4618at 5241.387 kb on + strand, within PP_4619at 5241.388 kb on - strandat 5241.388 kb on - strand, within PP_4619at 5241.388 kb on - strand, within PP_4619at 5241.642 kb on + strand, within PP_4619at 5241.657 kb on + strand, within PP_4619at 5241.741 kb on - strand, within PP_4619at 5241.741 kb on - strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.744 kb on + strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.745 kb on - strand, within PP_4619at 5241.796 kb on - strand, within PP_4619at 5241.852 kb on + strandat 5241.853 kb on - strandat 5241.853 kb on - strandat 5241.855 kb on + strandat 5241.855 kb on + strandat 5241.855 kb on + strandat 5241.856 kb on - strandat 5241.856 kb on - strandat 5241.856 kb on - strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.861 kb on + strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.862 kb on - strandat 5241.871 kb on + strandat 5241.872 kb on - strandat 5242.170 kb on + strand, within PP_4620at 5242.170 kb on + strand, within PP_4620at 5242.170 kb on + strand, within PP_4620at 5242.171 kb on - strand, within PP_4620at 5242.171 kb on - strand, within PP_4620at 5242.302 kb on + strand, within PP_4620at 5242.303 kb on - strand, within PP_4620at 5242.303 kb on - strand, within PP_4620at 5242.438 kb on - strand, within PP_4620at 5242.575 kb on + strand, within PP_4620at 5242.576 kb on - strand, within PP_4620at 5242.707 kb on + strand, within PP_4620at 5242.707 kb on + strand, within PP_4620at 5242.707 kb on + strand, within PP_4620at 5242.708 kb on - strand, within PP_4620at 5242.708 kb on - strand, within PP_4620at 5242.713 kb on + strand, within PP_4620at 5242.713 kb on + strand, within PP_4620at 5242.713 kb on + strand, within PP_4620at 5242.714 kb on - strand, within PP_4620at 5242.714 kb on - strand, within PP_4620at 5242.714 kb on - strand, within PP_4620at 5242.714 kb on - strand, within PP_4620at 5242.783 kb on - strand, within PP_4620at 5242.789 kb on - strand, within PP_4620at 5242.795 kb on - strand, within PP_4620at 5242.942 kb on - strand, within PP_4620at 5243.153 kb on - strandat 5243.153 kb on - strandat 5243.153 kb on - strandat 5243.181 kb on + strandat 5243.227 kb on + strandat 5243.227 kb on + strandat 5243.227 kb on + strandat 5243.228 kb on - strandat 5243.232 kb on + strandat 5243.233 kb on - strandat 5243.446 kb on - strand, within PP_4621at 5243.664 kb on + strand, within PP_4621at 5243.664 kb on + strand, within PP_4621at 5243.664 kb on + strand, within PP_4621at 5243.665 kb on - strand, within PP_4621at 5243.665 kb on - strand, within PP_4621at 5243.670 kb on + strand, within PP_4621at 5243.670 kb on + strand, within PP_4621at 5243.756 kb on + strand, within PP_4621at 5243.788 kb on - strand, within PP_4621at 5243.788 kb on - strand, within PP_4621at 5243.893 kb on - strand, within PP_4621at 5244.082 kb on - strand, within PP_4621at 5244.082 kb on - strand, within PP_4621at 5244.087 kb on + strand, within PP_4621at 5244.087 kb on + strand, within PP_4621at 5244.087 kb on + strand, within PP_4621at 5244.087 kb on + strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621at 5244.088 kb on - strand, within PP_4621

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2
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5,241,015 - PP_4618 0.71 -0.4
5,241,087 + PP_4618 0.80 +0.4
5,241,109 - PP_4618 0.83 -2.0
5,241,387 + PP_4619 0.23 -3.3
5,241,388 - +0.0
5,241,388 - PP_4619 0.24 -2.5
5,241,388 - PP_4619 0.24 -3.6
5,241,642 + PP_4619 0.64 -4.6
5,241,657 + PP_4619 0.66 -3.2
5,241,741 - PP_4619 0.79 +3.7
5,241,741 - PP_4619 0.79 -1.6
5,241,744 + PP_4619 0.80 -4.8
5,241,744 + PP_4619 0.80 -2.4
5,241,744 + PP_4619 0.80 -3.4
5,241,744 + PP_4619 0.80 -3.1
5,241,744 + PP_4619 0.80 -3.4
5,241,745 - PP_4619 0.80 -3.3
5,241,745 - PP_4619 0.80 -3.3
5,241,745 - PP_4619 0.80 -4.0
5,241,796 - PP_4619 0.88 -1.1
5,241,852 + -2.1
5,241,853 - -2.4
5,241,853 - -2.4
5,241,855 + +0.0
5,241,855 + -4.1
5,241,855 + -3.0
5,241,856 - -3.3
5,241,856 - -1.4
5,241,856 - -3.4
5,241,861 + -0.8
5,241,861 + +0.9
5,241,861 + -3.5
5,241,861 + -1.9
5,241,861 + -3.3
5,241,861 + -2.5
5,241,862 - -1.8
5,241,862 - -3.3
5,241,862 - -2.5
5,241,862 - -3.4
5,241,862 - -3.6
5,241,871 + -3.5
5,241,872 - +1.7
5,242,170 + PP_4620 0.22 -2.3
5,242,170 + PP_4620 0.22 -3.1
5,242,170 + PP_4620 0.22 -3.2
5,242,171 - PP_4620 0.22 -3.8
5,242,171 - PP_4620 0.22 -3.0
5,242,302 + PP_4620 0.32 -4.5
5,242,303 - PP_4620 0.32 -3.3
5,242,303 - PP_4620 0.32 -3.2
5,242,438 - PP_4620 0.43 -3.5
5,242,575 + PP_4620 0.53 -3.6
5,242,576 - PP_4620 0.54 -2.9
5,242,707 + PP_4620 0.64 -4.6
5,242,707 + PP_4620 0.64 -2.1
5,242,707 + PP_4620 0.64 -3.5
5,242,708 - PP_4620 0.64 -2.8
5,242,708 - PP_4620 0.64 -2.8
5,242,713 + PP_4620 0.64 -3.9
5,242,713 + PP_4620 0.64 -3.6
5,242,713 + PP_4620 0.64 -3.0
5,242,714 - PP_4620 0.64 -2.4
5,242,714 - PP_4620 0.64 -4.7
5,242,714 - PP_4620 0.64 -2.8
5,242,714 - PP_4620 0.64 -3.0
5,242,783 - PP_4620 0.70 -3.9
5,242,789 - PP_4620 0.70 -3.3
5,242,795 - PP_4620 0.70 -3.3
5,242,942 - PP_4620 0.82 -2.2
5,243,153 - -2.8
5,243,153 - -4.0
5,243,153 - -3.5
5,243,181 + -3.8
5,243,227 + -0.3
5,243,227 + +1.0
5,243,227 + +3.0
5,243,228 - +0.2
5,243,232 + +2.2
5,243,233 - -0.1
5,243,446 - PP_4621 0.20 +0.7
5,243,664 + PP_4621 0.37 -1.0
5,243,664 + PP_4621 0.37 -3.0
5,243,664 + PP_4621 0.37 -1.2
5,243,665 - PP_4621 0.37 -0.5
5,243,665 - PP_4621 0.37 +0.7
5,243,670 + PP_4621 0.38 +1.5
5,243,670 + PP_4621 0.38 -0.4
5,243,756 + PP_4621 0.44 -1.1
5,243,788 - PP_4621 0.47 -2.9
5,243,788 - PP_4621 0.47 -0.3
5,243,893 - PP_4621 0.55 -0.9
5,244,082 - PP_4621 0.69 -2.6
5,244,082 - PP_4621 0.69 -0.8
5,244,087 + PP_4621 0.70 +2.4
5,244,087 + PP_4621 0.70 -0.7
5,244,087 + PP_4621 0.70 +0.7
5,244,087 + PP_4621 0.70 -3.9
5,244,088 - PP_4621 0.70 +0.8
5,244,088 - PP_4621 0.70 +0.0
5,244,088 - PP_4621 0.70 -1.0
5,244,088 - PP_4621 0.70 -0.4
5,244,088 - PP_4621 0.70 -0.8
5,244,088 - PP_4621 0.70 +1.6
5,244,088 - PP_4621 0.70 +1.5
5,244,088 - PP_4621 0.70 -2.5

Or see this region's nucleotide sequence