Strain Fitness in Pseudomonas putida KT2440 around PP_4605

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,224,845	-				+0.0
5,224,845	-		PP_4604	0.19	+0.7
5,224,886	+		PP_4604	0.23	-0.6
5,224,886	+		PP_4604	0.23	+1.9
5,224,893	+		PP_4604	0.24	-1.7
5,224,894	-		PP_4604	0.24	-2.8
5,224,941	+		PP_4604	0.29	-1.6
5,224,941	+		PP_4604	0.29	-0.8
5,224,942	-		PP_4604	0.30	-1.4
5,224,943	+		PP_4604	0.30	+0.1
5,224,943	+		PP_4604	0.30	-1.2
5,224,944	-		PP_4604	0.30	-2.5
5,225,015	+		PP_4604	0.38	+1.1
5,225,132	+		PP_4604	0.51	-0.8
5,225,263	-		PP_4604	0.65	-0.5
5,225,428	-		PP_4604	0.83	+0.0
5,225,506	+				-0.7
5,225,507	-				+1.5
5,225,507	-				+0.6
5,225,507	-				+1.2
5,225,561	+				+1.5
5,225,562	-				-0.3
5,225,562	-				-3.0
5,225,640	-				-1.1
5,225,736	+				+1.9
5,225,895	+		PP_4605	0.15	-2.4
5,225,907	-		PP_4605	0.16	-1.0
5,225,928	+		PP_4605	0.19	-0.9
5,225,928	+		PP_4605	0.19	-0.5
5,225,929	-		PP_4605	0.19	-0.7
5,226,063	+		PP_4605	0.34	+1.9
5,226,063	+		PP_4605	0.34	-2.3
5,226,063	+		PP_4605	0.34	+0.4
5,226,063	+		PP_4605	0.34	-2.1
5,226,063	+		PP_4605	0.34	+0.5
5,226,063	+		PP_4605	0.34	+1.7
5,226,063	+		PP_4605	0.34	+0.7
5,226,064	-		PP_4605	0.34	+0.0
5,226,064	-		PP_4605	0.34	-1.3
5,226,064	-		PP_4605	0.34	-3.4
5,226,064	-		PP_4605	0.34	-0.2
5,226,064	-		PP_4605	0.34	+0.3
5,226,064	-		PP_4605	0.34	+0.1
5,226,064	-		PP_4605	0.34	-1.6
5,226,064	-		PP_4605	0.34	+1.6
5,226,097	+		PP_4605	0.38	-0.6
5,226,097	+		PP_4605	0.38	+0.6
5,226,097	+		PP_4605	0.38	+0.3
5,226,098	-		PP_4605	0.38	+0.5
5,226,346	-		PP_4605	0.67	-0.2
5,226,466	-		PP_4605	0.80	-2.0
5,226,466	-		PP_4605	0.80	-0.8
5,226,518	-		PP_4605	0.86	-0.7
5,226,518	-		PP_4605	0.86	+0.0
5,226,541	+		PP_4605	0.89	+0.6
5,226,542	-		PP_4605	0.89	-0.0
5,226,616	-				+0.1
5,226,669	+				-2.8
5,226,726	+				+2.4
5,226,726	+				-1.3
5,226,747	+				-0.0
5,226,747	+				+1.7
5,226,747	+				-1.0
5,226,747	+				+1.1
5,226,747	+				+0.4
5,226,748	-				+2.6
5,226,748	-				+0.4
5,226,750	+				-0.7
5,226,750	+				-1.6
5,226,750	+				+1.6
5,226,750	+				-1.3
5,226,750	+				+1.4
5,226,751	-				-3.7
5,226,751	-				-2.6
5,226,751	-				+2.0
5,226,751	-				-0.8
5,226,751	-				-3.0
5,226,751	-				-2.2
5,226,751	-				+0.4
5,226,819	+				+0.6
5,226,844	+				-0.6
5,226,845	-				-0.1
5,226,846	+				-2.8
5,226,846	+				+2.6
5,226,847	-				-2.3
5,226,847	-				+1.8
5,226,847	-				+1.9
5,226,865	+				+2.4
5,226,866	-				-2.2
5,226,866	-				-0.1
5,226,954	+		PP_4606	0.12	+1.1
5,227,050	+		PP_4606	0.16	+1.8
5,227,050	+		PP_4606	0.16	-1.3
5,227,051	-		PP_4606	0.16	+1.7
5,227,051	-		PP_4606	0.16	+1.0
5,227,178	+		PP_4606	0.21	+0.7
5,227,178	+		PP_4606	0.21	+0.8
5,227,179	-		PP_4606	0.21	+1.2
5,227,179	-		PP_4606	0.21	+0.4
5,227,179	-		PP_4606	0.21	-1.6
5,227,195	+		PP_4606	0.22	+0.9
5,227,359	+		PP_4606	0.29	-0.5
5,227,359	+		PP_4606	0.29	-2.2
5,227,359	+		PP_4606	0.29	+0.4
5,227,359	+		PP_4606	0.29	-2.3
5,227,360	-		PP_4606	0.29	+1.1
5,227,360	-		PP_4606	0.29	+0.9
5,227,360	-		PP_4606	0.29	+1.0
5,227,360	-		PP_4606	0.29	-0.5
5,227,360	-		PP_4606	0.29	+0.7
5,227,387	-		PP_4606	0.30	-1.4
5,227,464	+		PP_4606	0.33	-2.0
5,227,465	-		PP_4606	0.33	+0.4
5,227,465	-		PP_4606	0.33	+0.2
5,227,473	+		PP_4606	0.34	-1.4
5,227,496	+		PP_4606	0.35	-2.4
5,227,496	+		PP_4606	0.35	+1.5
5,227,497	-		PP_4606	0.35	+0.8
5,227,497	-		PP_4606	0.35	-0.2
5,227,618	-		PP_4606	0.40	-2.7