Experiment: Tetrahymena sp., Mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4583 and PP_4584 are separated by 459 nucleotides PP_4584 and PP_4585 are separated by 71 nucleotides PP_4585 and PP_4586 are separated by 114 nucleotides
PP_4583: PP_4583 - putative Peptidase, at 5,201,694 to 5,203,736
_4583
PP_4584: PP_4584 - putative endonuclease, at 5,204,196 to 5,204,567
_4584
PP_4585: PP_4585 - RNA methyltransferase, TrmH family, at 5,204,639 to 5,205,109
_4585
PP_4586: PP_4586 - conserved exported protein of unknown function, at 5,205,224 to 5,206,432
_4586
Position (kb) 5204
5205 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5203.425 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.479 kb on + strand, within PP_4583 at 5203.479 kb on + strand, within PP_4583 at 5203.480 kb on - strand, within PP_4583 at 5203.560 kb on + strand at 5203.702 kb on - strand at 5203.728 kb on - strand at 5203.739 kb on + strand at 5203.739 kb on + strand at 5203.904 kb on - strand at 5203.904 kb on - strand at 5203.904 kb on - strand at 5203.919 kb on + strand at 5203.919 kb on + strand at 5203.920 kb on - strand at 5203.929 kb on + strand at 5203.939 kb on + strand at 5203.952 kb on + strand at 5203.952 kb on + strand at 5203.982 kb on + strand at 5203.983 kb on - strand at 5204.097 kb on + strand at 5204.098 kb on - strand at 5204.159 kb on + strand at 5204.159 kb on + strand at 5204.302 kb on - strand, within PP_4584 at 5204.302 kb on - strand, within PP_4584 at 5204.433 kb on + strand, within PP_4584 at 5204.433 kb on + strand, within PP_4584 at 5204.460 kb on + strand, within PP_4584 at 5204.475 kb on + strand, within PP_4584 at 5204.519 kb on + strand, within PP_4584 at 5204.519 kb on + strand, within PP_4584 at 5204.604 kb on + strand at 5204.604 kb on + strand at 5204.605 kb on - strand at 5204.606 kb on + strand at 5204.654 kb on + strand at 5204.726 kb on + strand, within PP_4585 at 5204.726 kb on + strand, within PP_4585 at 5204.726 kb on + strand, within PP_4585 at 5204.727 kb on - strand, within PP_4585 at 5204.747 kb on + strand, within PP_4585 at 5204.747 kb on + strand, within PP_4585 at 5204.748 kb on - strand, within PP_4585 at 5204.762 kb on + strand, within PP_4585 at 5204.763 kb on - strand, within PP_4585 at 5204.763 kb on - strand, within PP_4585 at 5204.807 kb on + strand, within PP_4585 at 5204.807 kb on + strand, within PP_4585 at 5204.808 kb on - strand, within PP_4585 at 5204.887 kb on - strand, within PP_4585 at 5204.887 kb on - strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.932 kb on + strand, within PP_4585 at 5204.933 kb on - strand, within PP_4585 at 5204.936 kb on + strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.057 kb on - strand, within PP_4585 at 5205.083 kb on - strand at 5205.108 kb on - strand at 5205.176 kb on + strand at 5205.176 kb on + strand at 5205.225 kb on + strand at 5205.335 kb on + strand at 5205.335 kb on + strand at 5205.335 kb on + strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.530 kb on + strand, within PP_4586 at 5205.546 kb on + strand, within PP_4586 at 5205.549 kb on + strand, within PP_4586 at 5205.550 kb on - strand, within PP_4586 at 5205.567 kb on - strand, within PP_4586
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-2 remove 5,203,425 + PP_4583 0.85 +2.4 5,203,461 + PP_4583 0.86 +0.9 5,203,461 + PP_4583 0.86 +0.1 5,203,461 + PP_4583 0.86 -2.7 5,203,461 + PP_4583 0.86 +0.1 5,203,461 + PP_4583 0.86 +2.2 5,203,479 + PP_4583 0.87 -2.2 5,203,479 + PP_4583 0.87 +1.3 5,203,480 - PP_4583 0.87 -1.6 5,203,560 + +0.9 5,203,702 - +0.0 5,203,728 - +1.0 5,203,739 + +0.9 5,203,739 + -0.1 5,203,904 - -1.2 5,203,904 - +1.5 5,203,904 - -0.8 5,203,919 + +1.6 5,203,919 + +0.1 5,203,920 - +0.9 5,203,929 + +3.0 5,203,939 + +0.8 5,203,952 + -1.2 5,203,952 + -1.4 5,203,982 + -1.6 5,203,983 - -1.9 5,204,097 + +0.8 5,204,098 - -0.6 5,204,159 + +1.0 5,204,159 + -0.5 5,204,302 - PP_4584 0.28 +0.8 5,204,302 - PP_4584 0.28 -2.2 5,204,433 + PP_4584 0.64 +1.6 5,204,433 + PP_4584 0.64 +1.3 5,204,460 + PP_4584 0.71 +0.5 5,204,475 + PP_4584 0.75 +5.0 5,204,519 + PP_4584 0.87 +2.1 5,204,519 + PP_4584 0.87 -1.5 5,204,604 + +0.8 5,204,604 + -0.5 5,204,605 - +1.6 5,204,606 + -2.5 5,204,654 + +3.0 5,204,726 + PP_4585 0.18 +2.3 5,204,726 + PP_4585 0.18 -0.8 5,204,726 + PP_4585 0.18 +0.5 5,204,727 - PP_4585 0.19 -0.2 5,204,747 + PP_4585 0.23 -0.7 5,204,747 + PP_4585 0.23 -0.7 5,204,748 - PP_4585 0.23 +1.6 5,204,762 + PP_4585 0.26 +0.7 5,204,763 - PP_4585 0.26 +0.6 5,204,763 - PP_4585 0.26 -1.6 5,204,807 + PP_4585 0.36 -0.6 5,204,807 + PP_4585 0.36 +0.6 5,204,808 - PP_4585 0.36 +1.0 5,204,887 - PP_4585 0.53 -1.0 5,204,887 - PP_4585 0.53 -4.2 5,204,912 + PP_4585 0.58 -3.3 5,204,912 + PP_4585 0.58 -0.5 5,204,912 + PP_4585 0.58 -0.6 5,204,932 + PP_4585 0.62 +0.6 5,204,933 - PP_4585 0.62 +0.7 5,204,936 + PP_4585 0.63 +0.4 5,204,937 - PP_4585 0.63 -0.7 5,204,937 - PP_4585 0.63 -1.5 5,204,937 - PP_4585 0.63 -0.1 5,204,937 - PP_4585 0.63 -2.7 5,204,998 + PP_4585 0.76 +1.5 5,204,998 + PP_4585 0.76 -1.0 5,204,998 + PP_4585 0.76 -1.8 5,204,999 - PP_4585 0.76 -0.5 5,204,999 - PP_4585 0.76 +0.8 5,204,999 - PP_4585 0.76 -1.1 5,204,999 - PP_4585 0.76 -1.2 5,204,999 - PP_4585 0.76 -0.1 5,205,002 + PP_4585 0.77 -0.7 5,205,002 + PP_4585 0.77 +2.0 5,205,002 + PP_4585 0.77 +0.0 5,205,002 + PP_4585 0.77 +0.6 5,205,002 + PP_4585 0.77 +0.6 5,205,003 - PP_4585 0.77 +1.3 5,205,003 - PP_4585 0.77 +0.3 5,205,003 - PP_4585 0.77 +1.5 5,205,003 - PP_4585 0.77 +0.1 5,205,003 - PP_4585 0.77 -1.9 5,205,003 - PP_4585 0.77 +0.6 5,205,056 + PP_4585 0.89 +0.2 5,205,056 + PP_4585 0.89 -1.6 5,205,056 + PP_4585 0.89 -0.5 5,205,056 + PP_4585 0.89 -0.5 5,205,056 + PP_4585 0.89 +0.9 5,205,057 - PP_4585 0.89 +0.7 5,205,083 - +0.5 5,205,108 - -2.3 5,205,176 + +0.3 5,205,176 + +2.5 5,205,225 + +1.0 5,205,335 + +1.2 5,205,335 + +0.3 5,205,335 + -0.8 5,205,336 - +2.4 5,205,336 - +1.0 5,205,336 - +2.0 5,205,336 - +0.7 5,205,530 + PP_4586 0.25 -1.8 5,205,546 + PP_4586 0.27 +2.8 5,205,549 + PP_4586 0.27 +1.3 5,205,550 - PP_4586 0.27 +0.4 5,205,567 - PP_4586 0.28 +0.8
Or see this region's nucleotide sequence