Strain Fitness in Pseudomonas putida KT2440 around PP_4567

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,186,519	+				-0.8
5,186,544	-				+3.0
5,186,544	-				+2.0
5,186,544	-				-1.5
5,186,544	-				-3.4
5,186,587	+				+0.1
5,186,587	+				+1.9
5,186,588	-				+0.6
5,186,628	+				+0.3
5,186,628	+				+0.2
5,186,647	+				-0.1
5,186,647	+				+0.0
5,186,813	-				+0.1
5,186,992	+		PP_4566	0.37	-2.5
5,186,992	+		PP_4566	0.37	-2.3
5,186,992	+		PP_4566	0.37	-1.5
5,186,993	-		PP_4566	0.38	+0.3
5,186,993	-		PP_4566	0.38	+0.8
5,186,993	-		PP_4566	0.38	-1.3
5,187,348	+		PP_4566	0.78	+0.6
5,187,348	+		PP_4566	0.78	-3.1
5,187,348	+		PP_4566	0.78	-0.2
5,187,349	-		PP_4566	0.78	-0.9
5,187,349	-		PP_4566	0.78	-0.2
5,187,356	+		PP_4566	0.79	-0.3
5,187,357	+		PP_4566	0.79	-3.2
5,187,388	+		PP_4566	0.83	+1.7
5,187,430	+		PP_4566	0.87	+0.2
5,187,430	+		PP_4566	0.87	-1.1
5,187,431	-		PP_4566	0.88	+0.7
5,187,431	-		PP_4566	0.88	-1.7
5,187,478	+				-1.6
5,187,478	+				-0.8
5,187,478	+				+3.4
5,187,478	+				+0.7
5,187,479	-				-2.8
5,187,566	-		PP_4567	0.14	+0.5
5,187,608	-		PP_4567	0.22	+0.9
5,187,658	+		PP_4567	0.31	-0.7
5,187,674	+		PP_4567	0.34	-2.0
5,187,674	+		PP_4567	0.34	-2.5
5,187,674	+		PP_4567	0.34	-2.4
5,187,674	+		PP_4567	0.34	-0.7
5,187,674	+		PP_4567	0.34	+1.5
5,187,674	+		PP_4567	0.34	-0.5
5,187,675	-		PP_4567	0.35	-0.3
5,187,675	-		PP_4567	0.35	+0.3
5,187,675	-		PP_4567	0.35	-1.8
5,187,688	+		PP_4567	0.37	+0.1
5,187,689	-		PP_4567	0.37	-1.9
5,187,689	-		PP_4567	0.37	-0.6
5,187,822	-		PP_4567	0.63	+0.9
5,187,914	-		PP_4567	0.81	+0.7
5,187,925	+		PP_4567	0.83	-3.6
5,187,925	+		PP_4567	0.83	+0.1
5,187,925	+		PP_4567	0.83	+1.0
5,187,926	-		PP_4567	0.83	-0.9
5,187,928	+		PP_4567	0.84	-0.2
5,187,928	+		PP_4567	0.84	+1.4
5,187,928	+				+1.1
5,187,929	-		PP_4567	0.84	-2.5
5,187,929	-		PP_4567	0.84	-0.9
5,187,929	-		PP_4567	0.84	-3.3
5,187,929	-		PP_4567	0.84	+1.0
5,187,929	-		PP_4567	0.84	-2.0
5,188,016	+				+3.2
5,188,016	+				+0.2
5,188,160	+		PP_4568	0.16	-3.3
5,188,160	+		PP_4568	0.16	-3.5
5,188,161	-		PP_4568	0.17	-0.9
5,188,161	-		PP_4568	0.17	-2.4
5,188,375	-		PP_4568	0.41	-0.4
5,188,450	+		PP_4568	0.49	-3.2
5,188,476	-		PP_4568	0.52	-2.6
5,188,573	+		PP_4568	0.63	+0.9
5,188,573	+		PP_4568	0.63	+0.7
5,188,574	-		PP_4568	0.63	+0.7
5,188,614	+		PP_4568	0.68	-1.5
5,188,631	+		PP_4568	0.70	+0.7
5,188,631	+		PP_4568	0.70	-0.9
5,188,643	+		PP_4568	0.71	+0.6
5,188,718	-		PP_4568	0.80	-1.7
5,188,854	+				-1.6
5,188,854	+				-0.4
5,188,855	-				+0.5
5,188,911	+				-3.5
5,188,911	+				+1.3
5,188,911	+				-2.5
5,188,912	-				-2.2
5,188,912	-				-1.0
5,188,914	+				-0.2
5,188,914	+				+0.8
5,188,914	+				-2.5
5,188,914	+				+1.4
5,188,922	+				+2.8
5,188,923	-				+1.4
5,188,975	+				-3.5
5,188,976	-				-2.3