Strain Fitness in Pseudomonas putida KT2440 around PP_4532

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,144,543	+		PP_4529	0.71	-1.7
5,144,544	-		PP_4529	0.72	+0.7
5,144,615	+				-3.1
5,144,615	+				-0.4
5,144,615	+				-0.6
5,144,615	+				+0.9
5,144,616	-				-2.1
5,144,616	-				-0.3
5,144,662	+		PP_4530	0.25	+0.6
5,144,662	+		PP_4530	0.25	+0.4
5,144,662	+		PP_4530	0.25	-0.5
5,144,662	+		PP_4530	0.25	-0.1
5,144,662	+		PP_4530	0.25	+1.0
5,144,662	+		PP_4530	0.25	-0.3
5,144,663	-		PP_4530	0.25	+0.2
5,144,663	-		PP_4530	0.25	+0.5
5,144,663	-		PP_4530	0.25	+0.6
5,144,663	-		PP_4530	0.25	-1.1
5,144,688	-		PP_4530	0.34	+0.9
5,144,701	+		PP_4530	0.39	-0.7
5,144,701	+		PP_4530	0.39	-1.0
5,144,701	+		PP_4530	0.39	+1.4
5,144,701	+		PP_4530	0.39	-1.0
5,144,702	-		PP_4530	0.39	-0.8
5,144,702	-		PP_4530	0.39	-0.6
5,144,702	-		PP_4530	0.39	+2.9
5,144,722	+		PP_4530	0.46	-2.4
5,144,723	-		PP_4530	0.47	+0.1
5,144,723	-		PP_4530	0.47	-0.5
5,144,895	+				-0.3
5,144,896	-				+0.4
5,144,896	-				-0.3
5,144,899	+				-0.1
5,144,900	-				+0.2
5,144,900	-				-0.7
5,144,905	-				-0.5
5,144,927	+				-2.7
5,144,938	-				-1.0
5,144,938	-				+2.6
5,144,990	+				-1.2
5,144,991	-				+2.8
5,144,991	-				+0.2
5,145,097	+				-1.1
5,145,106	+				-0.3
5,145,107	-				+0.3
5,145,107	-				+1.3
5,145,201	-		PP_4531	0.42	-1.8
5,145,296	+		PP_4531	0.77	+2.2
5,145,297	-		PP_4531	0.77	-1.6
5,145,297	-		PP_4531	0.77	-2.7
5,145,297	-		PP_4531	0.77	-1.3
5,145,432	+				-0.9
5,145,432	+				+1.6
5,145,432	+				+0.3
5,145,433	-				+1.0
5,145,433	-				-0.2
5,145,514	+				-0.1
5,145,515	-				-0.8
5,145,621	+				-1.2
5,145,621	+		PP_4532	0.14	-0.7
5,145,621	+		PP_4532	0.14	-2.9
5,145,622	-		PP_4532	0.14	-2.5
5,145,622	-		PP_4532	0.14	-2.2
5,145,622	-		PP_4532	0.14	-3.6
5,146,793	-				-1.1
5,146,856	+				-0.6
5,146,856	+				+0.9
5,146,857	-				-2.1
5,146,857	-				-0.6
5,146,886	-				+5.5
5,146,886	-				+0.5
5,146,886	-				+1.4
5,146,886	-				-1.0
5,147,008	+				-0.4
5,147,009	-				+1.4
5,147,009	-				-3.3
5,147,036	-		PP_4533	0.11	-3.1
5,147,223	-		PP_4533	0.25	+1.4
5,147,280	+		PP_4533	0.29	+0.2
5,147,280	+		PP_4533	0.29	+0.2
5,147,280	+		PP_4533	0.29	+1.5
5,147,280	+		PP_4533	0.29	-0.9
5,147,280	+		PP_4533	0.29	-2.7
5,147,280	+		PP_4533	0.29	-1.9
5,147,281	-		PP_4533	0.30	+1.7
5,147,281	-		PP_4533	0.30	+2.1
5,147,281	-		PP_4533	0.30	-2.2
5,147,281	-		PP_4533	0.30	+0.6
5,147,281	-		PP_4533	0.30	-0.2
5,147,281	-		PP_4533	0.30	+0.8
5,147,281	-		PP_4533	0.30	+1.9
5,147,281	-		PP_4533	0.30	-1.9
5,147,281	-		PP_4533	0.30	+1.8
5,147,322	+		PP_4533	0.33	+0.6
5,147,323	-		PP_4533	0.33	+0.1
5,147,323	-		PP_4533	0.33	-0.4
5,147,437	+		PP_4533	0.42	+1.6
5,147,438	-		PP_4533	0.42	+0.7
5,147,451	+		PP_4533	0.43	+0.8
5,147,452	-		PP_4533	0.43	+0.6
5,147,452	-		PP_4533	0.43	+0.4
5,147,542	+		PP_4533	0.50	-0.1
5,147,542	+		PP_4533	0.50	-2.9
5,147,543	-		PP_4533	0.50	-0.0
5,147,543	-		PP_4533	0.50	-0.9