Strain Fitness in Pseudomonas putida KT2440 around PP_4478

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,086,397	+		PP_4477	0.31	-0.9
5,086,397	+		PP_4477	0.31	-0.4
5,086,397	+		PP_4477	0.31	-0.9
5,086,480	-		PP_4477	0.38	+0.2
5,086,480	-		PP_4477	0.38	-1.4
5,086,551	+		PP_4477	0.43	-1.8
5,086,552	-		PP_4477	0.43	+0.5
5,086,556	-		PP_4477	0.43	-1.7
5,086,616	+		PP_4477	0.48	-0.8
5,086,616	+		PP_4477	0.48	-3.4
5,086,617	-		PP_4477	0.48	-0.1
5,086,617	-		PP_4477	0.48	+0.9
5,086,617	-		PP_4477	0.48	-0.2
5,086,617	-		PP_4477	0.48	-2.1
5,086,692	-		PP_4477	0.53	-1.9
5,086,767	-		PP_4477	0.59	+0.9
5,086,851	-		PP_4477	0.65	-2.7
5,086,916	+		PP_4477	0.70	+0.8
5,087,068	-		PP_4477	0.81	+0.9
5,087,230	-				-0.8
5,087,255	+				-0.6
5,087,255	+				-3.4
5,087,270	+				+1.6
5,087,270	+				+0.3
5,087,270	+				-3.3
5,087,271	-				-1.6
5,087,271	-				+1.3
5,087,271	-				-2.8
5,087,280	+				-1.9
5,087,312	+				+0.9
5,087,313	-				-1.3
5,087,347	+				-0.5
5,087,348	-				-0.9
5,087,348	-				+1.3
5,087,348	-				-1.3
5,087,348	-				-2.4
5,087,349	+				+0.7
5,087,350	-				+1.0
5,087,416	+				+0.6
5,087,425	+				-0.0
5,087,426	-				+3.3
5,087,440	+				-2.1
5,087,441	-				-3.8
5,087,441	-				-3.9
5,087,441	-				-0.0
5,087,557	+		PP_4478	0.14	-2.8
5,087,586	+		PP_4478	0.16	-1.8
5,087,587	-		PP_4478	0.16	+0.4
5,087,587	-		PP_4478	0.16	+0.9
5,087,587	-		PP_4478	0.16	-0.8
5,087,606	-		PP_4478	0.18	-3.0
5,087,616	-		PP_4478	0.18	-3.7
5,088,017	+		PP_4478	0.46	-3.9
5,088,017	+		PP_4478	0.46	-0.6
5,088,019	+		PP_4478	0.46	+0.3
5,088,019	+		PP_4478	0.46	-1.7
5,088,020	-		PP_4478	0.46	-1.2
5,088,020	-		PP_4478	0.46	-3.1
5,088,020	-		PP_4478	0.46	-0.5
5,088,020	-		PP_4478	0.46	-0.6
5,088,020	-		PP_4478	0.46	-2.8
5,088,020	-		PP_4478	0.46	-3.3
5,088,020	-		PP_4478	0.46	-1.7
5,088,068	+		PP_4478	0.49	-1.5
5,088,069	-		PP_4478	0.49	-1.8
5,088,171	-		PP_4478	0.56	+1.2
5,088,269	+		PP_4478	0.63	+1.0
5,088,270	-		PP_4478	0.63	-2.3
5,088,344	+		PP_4478	0.68	+0.7
5,088,376	+		PP_4478	0.70	-0.2
5,088,376	+		PP_4478	0.70	-0.2
5,088,377	-		PP_4478	0.70	-2.4
5,088,377	-		PP_4478	0.70	-0.2
5,088,473	-		PP_4478	0.77	-0.2
5,088,473	-		PP_4478	0.77	-0.8
5,088,480	+		PP_4478	0.77	-2.0
5,088,623	+		PP_4478	0.87	-2.6
5,088,624	-		PP_4478	0.87	-0.7
5,088,624	-		PP_4478	0.87	-2.2
5,088,796	+				-3.2
5,088,797	-				-1.4
5,088,812	-				-1.6
5,089,001	+		PP_4479	0.19	-0.5
5,089,001	+		PP_4479	0.19	-0.0
5,089,005	+		PP_4479	0.19	+2.1
5,089,006	-		PP_4479	0.19	-1.3
5,089,096	+		PP_4479	0.28	-0.3
5,089,106	-		PP_4479	0.29	-2.2
5,089,106	-		PP_4479	0.29	-0.0
5,089,106	-		PP_4479	0.29	-1.4
5,089,204	+		PP_4479	0.38	+1.4
5,089,205	-		PP_4479	0.38	+0.8
5,089,205	-		PP_4479	0.38	+2.4
5,089,582	+		PP_4479	0.75	-0.5
5,089,666	+		PP_4479	0.83	-0.3
5,089,667	-		PP_4479	0.83	+1.8
5,089,667	-		PP_4479	0.83	-1.3