Strain Fitness in Pseudomonas putida KT2440 around PP_4426

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,020,780	-				-0.2
5,020,935	+		PP_4425	0.13	+0.2
5,020,935	+		PP_4425	0.13	-1.5
5,020,936	-		PP_4425	0.14	+1.2
5,020,988	-		PP_4425	0.20	+0.9
5,020,993	+		PP_4425	0.21	+1.6
5,020,993	+		PP_4425	0.21	+0.5
5,020,993	+		PP_4425	0.21	+2.8
5,020,994	-		PP_4425	0.21	+0.1
5,020,994	-		PP_4425	0.21	-2.2
5,020,994	-		PP_4425	0.21	+2.7
5,021,008	+		PP_4425	0.23	-2.5
5,021,009	-		PP_4425	0.23	+0.6
5,021,009	-		PP_4425	0.23	+0.4
5,021,126	+		PP_4425	0.38	-1.6
5,021,127	-		PP_4425	0.38	+0.1
5,021,169	+		PP_4425	0.44	+1.1
5,021,243	+				+0.2
5,021,291	-		PP_4425	0.60	-1.9
5,021,321	+		PP_4425	0.64	+0.7
5,021,321	+		PP_4425	0.64	+1.7
5,021,322	-		PP_4425	0.64	-0.3
5,021,322	-		PP_4425	0.64	-0.3
5,021,322	-		PP_4425	0.64	-0.9
5,021,330	+		PP_4425	0.65	-0.7
5,021,330	+		PP_4425	0.65	+2.4
5,021,330	+		PP_4425	0.65	+0.6
5,021,569	-				+0.7
5,021,593	+				+1.7
5,021,593	+				-3.9
5,021,667	-				+1.1
5,021,700	-				-2.4
5,021,777	-		PP_4426	0.12	-3.0
5,021,857	-		PP_4426	0.24	-0.0
5,021,875	-		PP_4426	0.27	+3.6
5,022,033	-		PP_4426	0.51	+1.3
5,022,035	-		PP_4426	0.51	-1.7
5,022,061	+		PP_4426	0.55	+0.1
5,022,292	-				+1.1
5,022,326	-				-0.2
5,022,333	-				-1.9
5,022,333	-				+1.9
5,022,433	-		PP_4427	0.12	+0.3
5,022,439	+		PP_4427	0.13	-0.0
5,022,454	-		PP_4427	0.15	+0.7
5,022,530	+		PP_4427	0.27	-1.2
5,022,531	-		PP_4427	0.27	-0.8
5,022,681	-		PP_4427	0.50	+0.8
5,022,709	-		PP_4427	0.54	-2.1
5,022,709	-		PP_4427	0.54	-2.8
5,022,709	-		PP_4427	0.54	+1.5
5,022,722	-		PP_4427	0.56	-0.7
5,022,732	-		PP_4427	0.58	-2.6
5,022,764	-		PP_4427	0.62	+1.2
5,022,860	-		PP_4427	0.77	-1.2
5,022,860	-		PP_4427	0.77	-0.8
5,022,989	+				-3.0
5,022,989	+				+2.8
5,022,989	+				+0.9
5,022,989	+				+0.4
5,022,990	-				-2.8
5,022,990	-				-0.1
5,022,990	-				-0.5
5,022,990	-				-1.2
5,022,999	+				+3.4
5,023,000	-				+0.7
5,023,018	+				+1.4
5,023,028	+				-0.4
5,023,029	-				+1.1
5,023,082	+				+0.9
5,023,113	+				-0.8
5,023,292	-		PP_4428	0.25	-2.5
5,023,342	+		PP_4428	0.31	-2.6
5,023,343	-		PP_4428	0.31	+0.2