Strain Fitness in Pseudomonas putida KT2440 around PP_4423

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
5,018,235	+		PP_4422	0.58	+1.7
5,018,389	+		PP_4422	0.68	+0.8
5,018,390	-		PP_4422	0.68	-2.1
5,018,409	+		PP_4422	0.70	-2.4
5,018,409	+		PP_4422	0.70	+0.4
5,018,410	-		PP_4422	0.70	+1.3
5,018,410	-		PP_4422	0.70	-0.4
5,018,456	+		PP_4422	0.73	+0.2
5,018,504	+		PP_4422	0.76	+0.5
5,018,505	-		PP_4422	0.76	+0.6
5,018,505	-		PP_4422	0.76	-1.1
5,018,505	-		PP_4422	0.76	-1.6
5,018,538	+		PP_4422	0.78	-0.5
5,018,538	+		PP_4422	0.78	-1.8
5,018,539	-		PP_4422	0.78	-1.4
5,018,539	-		PP_4422	0.78	+1.0
5,018,605	-		PP_4422	0.83	+1.2
5,018,605	-		PP_4422	0.83	-1.1
5,018,605	-		PP_4422	0.83	+0.5
5,018,686	+		PP_4422	0.88	+0.1
5,018,686	+		PP_4422	0.88	+0.9
5,018,687	-		PP_4422	0.88	+2.3
5,018,687	-		PP_4422	0.88	-3.5
5,018,687	-		PP_4422	0.88	-0.0
5,018,687	-		PP_4422	0.88	-1.0
5,018,711	-				+0.1
5,018,734	-				+1.4
5,018,734	-				-0.7
5,018,734	-				-0.7
5,018,734	-				+3.3
5,018,734	-				+2.2
5,018,734	-				+0.7
5,018,734	-				-0.9
5,018,734	-				+0.4
5,018,827	-				+0.9
5,018,877	+				-2.0
5,018,878	-				+0.4
5,018,878	-				+2.6
5,018,905	+				+0.3
5,018,905	+				-1.2
5,018,905	+				+1.3
5,018,905	+				+0.9
5,018,906	-				-1.8
5,018,906	-				-1.5
5,018,906	-				-2.6
5,018,906	-				-2.4
5,018,906	-				-3.0
5,018,906	-				-1.1
5,018,906	-				+0.2
5,019,026	-				-0.2
5,019,026	-				-0.9
5,019,033	+				-1.8
5,019,034	-				-0.3
5,019,117	+				-0.7
5,019,117	+				-0.2
5,019,214	-				+1.2
5,019,220	+		PP_4423	0.10	+1.7
5,019,221	-		PP_4423	0.11	+0.6
5,019,249	+		PP_4423	0.13	-3.9
5,019,303	+		PP_4423	0.19	+1.9
5,019,303	+		PP_4423	0.19	-1.8
5,019,303	+		PP_4423	0.19	-0.2
5,019,303	+		PP_4423	0.19	-0.9
5,019,383	-		PP_4423	0.27	+0.4
5,019,491	-		PP_4423	0.38	-0.5
5,019,527	-		PP_4423	0.41	-1.2
5,019,570	+		PP_4423	0.46	+0.3
5,019,634	+		PP_4423	0.52	+1.2
5,019,729	+		PP_4423	0.62	-3.3
5,019,779	-		PP_4423	0.67	-0.8
5,019,927	+		PP_4423	0.81	+0.1
5,020,116	+				+0.9
5,020,117	-				-3.4
5,020,123	+				+0.2
5,020,142	+				+2.1
5,020,215	+				-2.9
5,020,246	+				+1.8
5,020,255	+				+1.1
5,020,295	+				+1.5
5,020,433	+		PP_4424	0.25	-1.0
5,020,608	+		PP_4424	0.63	-2.9
5,020,655	+		PP_4424	0.73	-1.1
5,020,780	-				-0.2
5,020,935	+		PP_4425	0.13	+0.2
5,020,935	+		PP_4425	0.13	-1.5
5,020,936	-		PP_4425	0.14	+1.2
5,020,988	-		PP_4425	0.20	+0.9
5,020,993	+		PP_4425	0.21	+1.6
5,020,993	+		PP_4425	0.21	+0.5
5,020,993	+		PP_4425	0.21	+2.8
5,020,994	-		PP_4425	0.21	+0.1
5,020,994	-		PP_4425	0.21	-2.2
5,020,994	-		PP_4425	0.21	+2.7
5,021,008	+		PP_4425	0.23	-2.5
5,021,009	-		PP_4425	0.23	+0.6
5,021,009	-		PP_4425	0.23	+0.4