Strain Fitness in Pseudomonas putida KT2440 around PP_4286

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,876,446	+				-2.3
4,876,446	+				+2.1
4,876,481	-				-0.5
4,876,481	-				-1.2
4,876,575	+				-3.0
4,876,575	+				+1.7
4,876,576	-				+2.2
4,876,576	-				-0.9
4,876,576	-				+0.5
4,876,589	+				-1.3
4,876,600	+				+0.5
4,876,600	+				-1.7
4,876,600	+				-1.7
4,876,601	-				+1.6
4,876,601	-				-1.1
4,876,601	-				+1.0
4,876,612	+				-1.5
4,876,612	+				-0.5
4,876,622	-				+0.7
4,876,622	-				-0.4
4,876,622	-				+0.8
4,876,742	-		PP_4285	0.40	+1.0
4,876,744	+		PP_4285	0.41	+1.1
4,876,744	+		PP_4285	0.41	+1.6
4,876,744	+		PP_4285	0.41	+1.3
4,876,745	-		PP_4285	0.41	+0.3
4,876,745	-		PP_4285	0.41	-0.7
4,876,745	-		PP_4285	0.41	+2.7
4,876,745	-		PP_4285	0.41	+1.1
4,876,771	+		PP_4285	0.49	-0.5
4,876,929	+				-1.2
4,876,929	+				+0.6
4,877,011	-				+0.9
4,877,042	-				-0.2
4,877,133	+				+0.7
4,877,133	+				-1.3
4,877,134	-				+0.8
4,877,134	-				-1.8
4,877,144	+				+2.3
4,877,144	+				+1.5
4,877,144	+				+2.2
4,877,144	+				+0.3
4,877,144	+				-0.5
4,877,145	-				+0.5
4,877,145	-				-0.6
4,877,145	-				+1.8
4,877,145	-				+3.1
4,877,145	-				+0.2
4,877,195	-				+0.7
4,877,248	+				-1.1
4,877,300	-				-0.4
4,877,328	+				-0.9
4,877,455	-		PP_4286	0.11	-1.2
4,877,574	+		PP_4286	0.24	-1.8
4,877,574	+		PP_4286	0.24	-3.5
4,877,574	+		PP_4286	0.24	-1.1
4,877,599	+		PP_4286	0.27	+1.4
4,877,600	-		PP_4286	0.27	-3.5
4,877,842	-		PP_4286	0.53	-1.4
4,877,902	-		PP_4286	0.59	+0.1
4,877,916	+		PP_4286	0.61	-2.6
4,877,916	+		PP_4286	0.61	-2.8
4,877,917	-		PP_4286	0.61	-1.7
4,877,917	-		PP_4286	0.61	-3.3
4,877,982	+		PP_4286	0.68	-1.0
4,877,982	+		PP_4286	0.68	-2.8
4,877,982	+		PP_4286	0.68	-1.0
4,877,982	+		PP_4286	0.68	-1.9
4,878,019	+		PP_4286	0.72	+1.7
4,878,019	+		PP_4286	0.72	-0.6
4,878,183	+		PP_4286	0.90	-2.6
4,878,184	-		PP_4286	0.90	-0.2
4,878,184	-		PP_4286	0.90	-0.5
4,878,258	+				-0.7
4,878,259	-				+0.5
4,878,350	+		PP_4287	0.14	-0.4
4,878,350	+		PP_4287	0.14	-3.1
4,878,351	-		PP_4287	0.14	+0.1
4,878,383	+		PP_4287	0.20	+0.9
4,878,626	+		PP_4287	0.67	-1.4
4,878,626	+		PP_4287	0.67	-0.0
4,878,627	-		PP_4287	0.68	-0.6
4,878,627	-		PP_4287	0.68	+0.1
4,878,628	+		PP_4287	0.68	-0.2
4,878,628	+		PP_4287	0.68	+1.9
4,878,628	+		PP_4287	0.68	-3.6
4,878,628	+		PP_4287	0.68	+0.7
4,878,628	+		PP_4287	0.68	+2.7
4,878,791	+				+0.3
4,878,792	-				+2.0
4,878,792	-				-1.0
4,878,792	-				+2.3
4,878,827	+				-0.6
4,878,828	-				-2.0
4,878,828	-				+2.8
4,878,828	-				-1.9
4,878,828	-				+1.4
4,878,836	+				+0.7
4,878,836	+				-0.0
4,878,837	-				+0.8
4,878,837	-				-1.9
4,878,854	+				+0.7
4,878,855	-				-2.3
4,878,855	-				+0.5
4,879,150	+		PP_4288	0.61	+1.4
4,879,178	+		PP_4288	0.66	-0.8
4,879,179	-		PP_4288	0.67	-0.1
4,879,196	+		PP_4288	0.70	-1.0
4,879,196	+		PP_4288	0.70	-0.2
4,879,200	+		PP_4288	0.71	-1.8