Strain Fitness in Pseudomonas putida KT2440 around PP_4144

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,679,948	-				+1.5
4,679,959	-				-1.0
4,680,111	+		PP_4143	0.17	-2.3
4,680,112	-		PP_4143	0.17	-3.8
4,680,204	+		PP_4143	0.29	-3.2
4,680,535	+		PP_4143	0.70	-2.6
4,680,535	+		PP_4143	0.70	-3.4
4,680,536	-		PP_4143	0.70	-2.5
4,680,536	-		PP_4143	0.70	-3.3
4,680,594	+		PP_4143	0.78	-3.5
4,680,788	-				-1.9
4,680,788	-				-2.2
4,680,788	-				+0.9
4,680,835	+				-0.1
4,680,835	+				+0.5
4,680,835	+				+0.1
4,680,835	+				+0.2
4,680,835	+				+0.5
4,680,836	-				-0.2
4,680,870	+				-0.8
4,680,870	+				-1.0
4,680,891	-				-0.9
4,681,178	+		PP_4144	0.44	+0.3
4,681,332	+		PP_4144	0.64	-1.5
4,681,347	+		PP_4144	0.66	-0.5
4,681,347	+		PP_4144	0.66	-0.5
4,681,347	+		PP_4144	0.66	-0.7
4,681,347	+		PP_4144	0.66	-0.5
4,681,347	+		PP_4144	0.66	+1.2
4,681,347	+		PP_4144	0.66	+0.8
4,681,348	-		PP_4144	0.66	+1.4
4,681,348	-		PP_4144	0.66	-2.3
4,681,516	+		PP_4144	0.88	-1.0
4,681,516	+		PP_4144	0.88	-0.4
4,681,516	+		PP_4144	0.88	+1.6
4,681,611	+				+1.9
4,681,623	-				-1.8
4,681,624	+				+2.1
4,681,624	+				-1.2
4,681,625	-				+0.6
4,681,625	-				-0.5
4,681,625	-				+0.4
4,681,696	+				-0.9
4,681,702	+				-0.7
4,681,702	+				+0.0
4,681,702	+				-0.7
4,681,702	+				+2.8
4,681,703	-				+2.4
4,681,703	-				-0.8
4,681,855	+		PP_4145	0.10	-2.5
4,681,966	-		PP_4145	0.18	-0.1
4,682,057	-		PP_4145	0.24	-0.6
4,682,065	+		PP_4145	0.25	+0.4
4,682,065	+		PP_4145	0.25	+0.8
4,682,065	+		PP_4145	0.25	+0.8
4,682,066	-		PP_4145	0.25	+2.1
4,682,066	-		PP_4145	0.25	+0.1
4,682,137	+		PP_4145	0.30	+0.3
4,682,281	+		PP_4145	0.40	+1.7
4,682,281	+		PP_4145	0.40	+0.0
4,682,281	+		PP_4145	0.40	+2.4
4,682,338	+		PP_4145	0.44	+2.8
4,682,338	+		PP_4145	0.44	+0.4
4,682,339	-		PP_4145	0.44	+0.1
4,682,408	-		PP_4145	0.49	+0.1
4,682,443	+		PP_4145	0.51	+1.5
4,682,444	-		PP_4145	0.51	+0.8
4,682,444	-		PP_4145	0.51	-0.3
4,682,447	+		PP_4145	0.51	+0.0
4,682,447	+		PP_4145	0.51	+1.5
4,682,494	+		PP_4145	0.55	+1.5
4,682,494	+		PP_4145	0.55	+0.9
4,682,494	+		PP_4145	0.55	-1.2
4,682,495	-		PP_4145	0.55	+1.3
4,682,495	-		PP_4145	0.55	+0.5
4,682,530	+		PP_4145	0.57	-0.0