Strain Fitness in Pseudomonas putida KT2440 around PP_4085

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,612,855	+				-1.6
4,612,855	+				-0.2
4,612,880	+				+1.2
4,613,137	+				-1.1
4,613,138	-				-1.8
4,613,170	+				+0.5
4,613,170	+				-2.7
4,613,170	+				-2.0
4,613,171	-				-2.9
4,613,171	-				+1.8
4,613,318	-		PP_4084	0.40	-1.9
4,613,320	+		PP_4084	0.41	+0.7
4,613,348	+		PP_4084	0.47	-1.5
4,613,499	+		PP_4084	0.82	+1.1
4,613,499	+		PP_4084	0.82	-0.3
4,613,500	-		PP_4084	0.82	+1.0
4,613,614	+				-0.3
4,613,723	-				+0.3
4,613,723	-				-2.8
4,613,723	-				+1.5
4,613,726	+				-3.5
4,613,726	+				+1.3
4,613,726	+				-0.1
4,613,726	+				+1.1
4,613,726	+				+1.5
4,613,726	+				-0.2
4,613,726	+				+1.1
4,613,727	-				+0.2
4,613,727	-				+0.4
4,613,981	-				+2.2
4,614,107	+		PP_4085	0.10	+0.6
4,614,107	+		PP_4085	0.10	+1.4
4,614,107	+		PP_4085	0.10	-1.4
4,614,107	+		PP_4085	0.10	+0.0
4,614,108	-		PP_4085	0.10	+0.8
4,614,141	+		PP_4085	0.11	-2.1
4,614,141	+		PP_4085	0.11	+0.1
4,614,141	+		PP_4085	0.11	+3.2
4,614,142	-		PP_4085	0.11	-2.3
4,614,142	-		PP_4085	0.11	+0.5
4,614,142	-		PP_4085	0.11	-1.6
4,614,142	-		PP_4085	0.11	+0.4
4,614,142	-		PP_4085	0.11	+1.4
4,614,273	+		PP_4085	0.14	+0.7
4,614,273	+		PP_4085	0.14	+1.6
4,614,273	+		PP_4085	0.14	-0.2
4,614,273	+		PP_4085	0.14	+1.2
4,614,273	+		PP_4085	0.14	-0.3
4,614,273	+		PP_4085	0.14	-0.4
4,614,273	+		PP_4085	0.14	+0.0
4,614,274	-		PP_4085	0.14	-2.2
4,614,274	-		PP_4085	0.14	-2.6
4,614,274	-		PP_4085	0.14	+0.7
4,614,351	+		PP_4085	0.16	+0.6
4,614,430	+		PP_4085	0.17	-0.1
4,614,440	-		PP_4085	0.18	-1.2
4,614,454	+		PP_4085	0.18	-1.6
4,614,454	+		PP_4085	0.18	-1.8
4,614,455	-		PP_4085	0.18	-0.3
4,614,455	-		PP_4085	0.18	-0.3
4,614,492	+		PP_4085	0.19	+2.8
4,614,493	-		PP_4085	0.19	-0.1
4,614,493	-		PP_4085	0.19	+0.2
4,614,596	+		PP_4085	0.21	-0.8
4,614,597	-		PP_4085	0.21	-1.8
4,614,628	-		PP_4085	0.22	+0.0
4,614,628	-		PP_4085	0.22	+0.3
4,614,694	+		PP_4085	0.23	-1.9
4,614,694	+		PP_4085	0.23	+1.4
4,614,707	+		PP_4085	0.23	-2.8
4,614,708	-		PP_4085	0.23	-2.7
4,614,830	-		PP_4085	0.26	-2.8
4,614,830	-		PP_4085	0.26	-1.1
4,614,846	-		PP_4085	0.26	+0.7
4,614,965	+		PP_4085	0.29	+2.0
4,614,965	+		PP_4085	0.29	-0.6
4,614,966	-		PP_4085	0.29	-0.9
4,614,974	+		PP_4085	0.29	-1.1
4,614,975	-		PP_4085	0.29	-0.5
4,614,975	-		PP_4085	0.29	-2.1
4,614,975	-		PP_4085	0.29	+0.3
4,614,975	-		PP_4085	0.29	-0.2
4,615,001	+		PP_4085	0.30	-3.9
4,615,002	-		PP_4085	0.30	-0.7
4,615,002	-		PP_4085	0.30	+0.9
4,615,036	-		PP_4085	0.31	-2.2
4,615,036	-		PP_4085	0.31	+1.7
4,615,070	-		PP_4085	0.31	+0.5
4,615,070	-		PP_4085	0.31	-1.0
4,615,074	+		PP_4085	0.31	+1.8
4,615,075	-		PP_4085	0.31	+0.4
4,615,075	-		PP_4085	0.31	-0.2
4,615,075	-		PP_4085	0.31	-0.4
4,615,100	+		PP_4085	0.32	-2.0
4,615,101	-		PP_4085	0.32	-1.5
4,615,107	-		PP_4085	0.32	+0.3
4,615,135	-		PP_4085	0.33	-0.9
4,615,135	-		PP_4085	0.33	-0.1
4,615,172	+		PP_4085	0.34	+0.9
4,615,172	+		PP_4085	0.34	+1.1
4,615,172	+		PP_4085	0.34	-0.8
4,615,172	+		PP_4085	0.34	+1.2
4,615,172	+		PP_4085	0.34	-0.3
4,615,172	+		PP_4085	0.34	-1.7
4,615,172	+		PP_4085	0.34	-0.1
4,615,172	+		PP_4085	0.34	+0.5
4,615,172	+		PP_4085	0.34	-1.2
4,615,173	-		PP_4085	0.34	+0.8
4,615,173	-		PP_4085	0.34	+1.6
4,615,173	-		PP_4085	0.34	+0.7
4,615,188	-		PP_4085	0.34	-1.0
4,615,196	-		PP_4085	0.34	-0.4
4,615,230	-		PP_4085	0.35	+0.1
4,615,268	-		PP_4085	0.36	-0.1
4,615,377	-		PP_4085	0.38	+1.1
4,615,389	-				+2.5
4,615,445	+		PP_4085	0.40	+2.6
4,615,445	+		PP_4085	0.40	-3.5
4,615,445	+		PP_4085	0.40	-3.0
4,615,446	-		PP_4085	0.40	-1.8
4,615,446	-		PP_4085	0.40	-0.2
4,615,448	+		PP_4085	0.40	+0.7
4,615,448	+		PP_4085	0.40	+0.5
4,615,448	+		PP_4085	0.40	+2.8
4,615,449	-		PP_4085	0.40	-0.5
4,615,449	-		PP_4085	0.40	-0.5
4,615,449	-		PP_4085	0.40	-0.4
4,615,449	-		PP_4085	0.40	+0.7
4,615,472	+		PP_4085	0.40	+0.4
4,615,472	+		PP_4085	0.40	-2.3
4,615,472	+		PP_4085	0.40	-1.2
4,615,472	+		PP_4085	0.40	-1.4
4,615,473	-		PP_4085	0.40	+0.4
4,615,473	-				+0.5
4,615,474	+		PP_4085	0.40	+1.2
4,615,475	-		PP_4085	0.40	-1.0
4,615,475	-		PP_4085	0.40	+1.1
4,615,475	-		PP_4085	0.40	+1.9
4,615,569	-		PP_4085	0.42	-1.7
4,616,441	+		PP_4085	0.61	+0.4
4,616,646	-		PP_4085	0.66	-1.4
4,616,646	-		PP_4085	0.66	+0.7
4,616,646	-		PP_4085	0.66	-1.7
4,616,649	-		PP_4085	0.66	+0.6
4,616,889	+		PP_4085	0.71	+0.8
4,617,023	+		PP_4085	0.74	-0.9
4,617,173	+		PP_4085	0.77	-0.6
4,617,249	-		PP_4085	0.79	-0.6
4,617,377	+		PP_4085	0.82	+0.0
4,617,455	-		PP_4085	0.83	+0.1
4,617,455	-		PP_4085	0.83	-1.5
4,617,461	+		PP_4085	0.83	-0.3
4,617,461	+		PP_4085	0.83	-0.2
4,617,461	+		PP_4085	0.83	-3.6
4,617,461	+		PP_4085	0.83	+1.0
4,617,461	+		PP_4085	0.83	-0.1
4,617,462	-		PP_4085	0.83	-0.4
4,617,462	-		PP_4085	0.83	-1.5
4,617,462	-		PP_4085	0.83	-1.8
4,617,462	-		PP_4085	0.83	+1.5
4,617,462	-		PP_4085	0.83	+0.5
4,617,462	-		PP_4085	0.83	-0.2
4,617,462	-		PP_4085	0.83	-0.6
4,617,462	-		PP_4085	0.83	-1.6
4,617,462	-		PP_4085	0.83	-2.3
4,617,462	-		PP_4085	0.83	-0.7
4,617,462	-		PP_4085	0.83	-2.2
4,617,462	-		PP_4085	0.83	+1.1
4,617,462	-		PP_4085	0.83	+0.5
4,617,462	-		PP_4085	0.83	+0.4
4,617,462	-		PP_4085	0.83	-2.9
4,617,467	+		PP_4085	0.84	-1.9
4,617,467	+		PP_4085	0.84	-0.8
4,617,468	-		PP_4085	0.84	+0.4
4,617,468	-		PP_4085	0.84	+0.1
4,617,485	+		PP_4085	0.84	+0.2
4,617,485	+		PP_4085	0.84	-0.8
4,617,485	+		PP_4085	0.84	+0.1
4,617,485	+		PP_4085	0.84	-0.1
4,617,486	-		PP_4085	0.84	-1.9
4,617,486	-		PP_4085	0.84	+1.4
4,617,486	-		PP_4085	0.84	-2.1
4,617,511	+		PP_4085	0.84	-0.8
4,617,536	+		PP_4085	0.85	-2.1
4,617,536	+		PP_4085	0.85	+0.3
4,617,605	-		PP_4085	0.87	-0.1
4,617,631	-		PP_4085	0.87	+0.9
4,617,634	+		PP_4085	0.87	+1.6
4,617,634	+		PP_4085	0.87	+1.0
4,617,634	+		PP_4085	0.87	+0.1
4,617,634	+		PP_4085	0.87	-0.6
4,617,635	-		PP_4085	0.87	-2.6
4,617,692	+		PP_4085	0.88	-3.2
4,617,714	+		PP_4085	0.89	+1.3
4,617,724	+		PP_4085	0.89	-1.3
4,617,751	-		PP_4085	0.90	-3.4
4,617,821	-				-1.8
4,617,821	-				-1.0
4,617,830	+				-2.1
4,617,830	+				-1.2
4,617,831	-				-2.6
4,617,873	-				+0.5
4,617,877	+				+0.5
4,617,878	-				+2.0
4,617,878	-				-0.3
4,617,888	-				+0.6
4,617,930	+				-2.9
4,617,931	-				+0.5
4,617,931	-				+0.1
4,617,931	-				+0.6
4,617,931	-				+0.6
4,617,931	-				-1.1
4,617,963	-				-0.7
4,617,963	-				-0.2
4,617,975	-				-0.9
4,617,991	+				+1.3
4,618,007	-				+0.3
4,618,037	+				+0.6
4,618,037	+				+0.0
4,618,050	+				-0.3
4,618,051	-				-1.4
4,618,178	+				-0.3
4,618,182	-				+1.5
4,618,196	-				-0.0
4,618,257	-				-0.7
4,618,417	-		PP_5652	0.35	+0.7
4,618,560	-		PP_5652	0.65	-2.8
4,618,560	-		PP_5652	0.65	+0.2
4,618,824	+				+0.1
4,618,824	+				-2.4
4,618,824	+				-1.1
4,618,825	-				-2.1
4,618,827	-				-0.5
4,619,058	-				+0.7
4,619,088	+				+0.1
4,619,088	+				-1.6
4,619,089	-				+1.3
4,619,090	+				-1.2
4,619,138	+				-2.2
4,619,212	+				-1.6