Strain Fitness in Pseudomonas putida KT2440 around PP_4071

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,595,192	+				+1.2
4,595,293	+				-0.9
4,595,309	+				-1.7
4,595,310	-				+0.1
4,595,310	-				-1.9
4,595,393	-				-3.5
4,595,513	+				-0.7
4,595,513	+				-0.3
4,595,513	+				-0.9
4,595,514	-				-1.7
4,595,514	-				+0.1
4,595,514	-				-0.2
4,595,514	-				-2.0
4,595,516	-				-2.9
4,595,516	-				+0.3
4,595,516	-				-2.7
4,595,516	-				-2.1
4,595,642	+		PP_4070	0.21	-0.0
4,595,642	+		PP_4070	0.21	-1.1
4,595,642	+		PP_4070	0.21	-1.0
4,595,643	-		PP_4070	0.21	-1.2
4,595,643	-		PP_4070	0.21	+1.2
4,595,643	-		PP_4070	0.21	-1.3
4,595,794	+		PP_4070	0.51	+0.4
4,595,794	+				+0.2
4,595,794	+		PP_4070	0.51	+1.8
4,595,795	-		PP_4070	0.51	-0.6
4,595,795	-		PP_4070	0.51	+2.0
4,595,836	-		PP_4070	0.59	+0.3
4,595,892	+		PP_4070	0.70	+1.8
4,596,070	-				+0.4
4,596,070	-				+1.9
4,596,070	-				+0.9
4,596,070	-				-0.4
4,596,070	-				-0.4
4,596,124	-				-0.3
4,596,133	-				+2.4
4,596,184	-				+0.5
4,596,184	-				-0.5
4,596,280	+				-0.3
4,596,284	-				+0.1
4,596,284	-				-2.1
4,596,423	+				-1.2
4,596,423	+				-0.5
4,596,423	+				+0.1
4,596,439	+				-1.3
4,596,439	+				-0.2
4,596,440	-				+2.4
4,596,440	-				+1.8
4,596,440	-				+0.3
4,596,509	-				-0.5
4,596,537	+				+0.7
4,596,538	-				-2.4
4,596,607	+		PP_4071	0.12	-2.2
4,596,765	+		PP_4071	0.16	+0.2
4,596,766	-		PP_4071	0.16	+2.2
4,596,766	-		PP_4071	0.16	-1.0
4,596,766	-		PP_4071	0.16	+2.0
4,596,848	+		PP_4071	0.18	-1.5
4,596,849	-				-0.7
4,596,858	+		PP_4071	0.19	+0.2
4,596,973	+		PP_4071	0.22	+0.0
4,596,973	+		PP_4071	0.22	+1.3
4,596,973	+		PP_4071	0.22	-0.2
4,596,974	-		PP_4071	0.22	-0.1
4,597,119	+		PP_4071	0.26	-0.1
4,597,120	-		PP_4071	0.26	-0.7
4,597,120	-		PP_4071	0.26	-2.7
4,597,120	-		PP_4071	0.26	+2.7
4,597,158	+				-0.8
4,597,159	-		PP_4071	0.27	+0.9
4,597,159	-		PP_4071	0.27	-2.1
4,597,161	+		PP_4071	0.27	-0.7
4,597,161	+		PP_4071	0.27	+1.4
4,597,307	+		PP_4071	0.31	+0.1
4,597,471	-				-1.0
4,597,471	-		PP_4071	0.36	-2.4
4,597,518	+		PP_4071	0.37	+1.1
4,597,519	-		PP_4071	0.37	+0.4
4,597,586	-		PP_4071	0.39	-0.6
4,597,600	-		PP_4071	0.39	-1.5
4,597,600	-		PP_4071	0.39	-1.4
4,597,768	-		PP_4071	0.44	-0.8
4,597,768	-		PP_4071	0.44	-1.9
4,597,768	-		PP_4071	0.44	-1.4
4,597,792	+		PP_4071	0.44	-0.2
4,597,792	+		PP_4071	0.44	-1.4
4,597,792	+		PP_4071	0.44	-3.3
4,597,793	-		PP_4071	0.44	+0.7
4,597,793	-		PP_4071	0.44	-0.8
4,597,866	+		PP_4071	0.46	-0.2
4,597,867	-		PP_4071	0.46	+1.1
4,597,867	-		PP_4071	0.46	-1.7
4,597,867	-		PP_4071	0.46	+0.6
4,597,993	-		PP_4071	0.50	-0.0
4,598,103	+		PP_4071	0.53	-1.0
4,598,103	+		PP_4071	0.53	+0.4
4,598,132	-		PP_4071	0.54	-1.7
4,598,132	-				+0.0
4,598,142	+		PP_4071	0.54	-0.5
4,598,143	-		PP_4071	0.54	-1.3
4,598,199	-		PP_4071	0.56	-2.1
4,598,280	+		PP_4071	0.58	+0.0
4,598,281	-		PP_4071	0.58	-3.1
4,598,334	+		PP_4071	0.59	-2.7
4,598,334	+		PP_4071	0.59	+0.0
4,598,335	-		PP_4071	0.59	-1.4
4,598,335	-		PP_4071	0.59	-1.1
4,598,378	+		PP_4071	0.61	-0.0
4,598,457	+		PP_4071	0.63	+0.4
4,598,458	-		PP_4071	0.63	-1.6
4,598,458	-		PP_4071	0.63	+1.7
4,598,491	-		PP_4071	0.64	+2.2
4,598,491	-		PP_4071	0.64	-1.0
4,598,491	-		PP_4071	0.64	-1.4
4,598,544	+		PP_4071	0.65	-0.6
4,598,544	+		PP_4071	0.65	-1.1
4,598,544	+		PP_4071	0.65	+0.5
4,598,544	+		PP_4071	0.65	+1.3
4,598,544	+		PP_4071	0.65	+0.6
4,598,545	-		PP_4071	0.65	-2.5
4,598,545	-		PP_4071	0.65	+0.1
4,598,545	-		PP_4071	0.65	-3.3
4,598,545	-				+2.3
4,598,594	+		PP_4071	0.67	+0.4
4,598,594	+		PP_4071	0.67	+2.2
4,598,610	+		PP_4071	0.67	+0.3
4,598,610	+		PP_4071	0.67	-0.7
4,598,610	+		PP_4071	0.67	+1.3
4,598,611	-		PP_4071	0.67	+0.5
4,598,611	-		PP_4071	0.67	+0.8
4,598,718	+		PP_4071	0.70	-0.0
4,598,719	-		PP_4071	0.70	+1.2
4,598,802	+		PP_4071	0.72	-1.6
4,598,803	-		PP_4071	0.72	-1.2
4,598,803	-		PP_4071	0.72	-2.1
4,598,814	+		PP_4071	0.73	+0.1
4,598,907	+		PP_4071	0.75	+0.6
4,598,955	+		PP_4071	0.76	-3.3
4,598,956	-		PP_4071	0.76	+1.8
4,598,956	-		PP_4071	0.76	+0.5
4,598,956	-		PP_4071	0.76	+0.1
4,599,053	+		PP_4071	0.79	+0.6
4,599,408	+		PP_4071	0.89	+3.4
4,599,409	-		PP_4071	0.89	-1.6
4,599,409	-		PP_4071	0.89	+0.8
4,599,424	-		PP_4071	0.89	-2.2
4,599,456	+				+1.6
4,599,457	-				-1.2
4,599,629	-				-1.8
4,599,629	-				-2.5
4,599,631	+				-0.6
4,599,631	+				-1.1
4,599,631	+				-1.8
4,599,631	+				+0.2
4,599,631	+				-0.2
4,599,631	+				-0.8
4,599,631	+				-0.2
4,599,631	+				+0.3
4,599,631	+				-2.2
4,599,631	+				+1.1
4,599,632	-				-0.6
4,599,731	+				-0.8
4,599,731	+				+1.1
4,599,731	+				+0.5
4,599,732	-				+1.6
4,599,790	-				-0.5
4,599,858	-				-0.9
4,599,858	-				+0.6
4,599,877	+				+1.3
4,600,000	-		PP_4072	0.13	-2.7
4,600,000	-		PP_4072	0.13	+0.0
4,600,051	+		PP_4072	0.17	-1.1
4,600,051	+		PP_4072	0.17	-3.1
4,600,066	+		PP_4072	0.18	+1.7
4,600,067	-		PP_4072	0.18	+1.2
4,600,390	+		PP_4072	0.40	+1.4
4,600,391	-		PP_4072	0.40	+1.4
4,600,391	-		PP_4072	0.40	+0.4
4,600,391	-		PP_4072	0.40	+1.2
4,600,416	-		PP_4072	0.42	+1.2
4,600,455	+		PP_4072	0.44	+0.3
4,600,455	+		PP_4072	0.44	+0.4
4,600,456	-		PP_4072	0.44	-2.8
4,600,456	-		PP_4072	0.44	+0.5
4,600,538	+		PP_4072	0.50	-0.4
4,600,702	-		PP_4072	0.61	+0.7
4,600,702	-		PP_4072	0.61	+0.5
4,600,789	+		PP_4072	0.67	-0.3
4,600,790	-		PP_4072	0.67	+1.6