Strain Fitness in Pseudomonas putida KT2440 around PP_3827

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,351,887	-		PP_3824	0.17	-0.5
4,352,055	+		PP_3824	0.61	-3.3
4,352,055	+		PP_3824	0.61	+0.1
4,352,056	-		PP_3824	0.61	+1.9
4,352,286	+				-1.7
4,352,287	-				-3.0
4,352,287	-				+1.3
4,352,385	-		PP_3825	0.14	+0.1
4,352,385	-		PP_3825	0.14	+0.1
4,352,385	-		PP_3825	0.14	-1.6
4,352,471	+		PP_3825	0.42	+1.3
4,352,471	+		PP_3825	0.42	+0.8
4,352,472	-		PP_3825	0.43	-1.2
4,352,472	-		PP_3825	0.43	-0.3
4,352,476	-		PP_3825	0.44	+0.4
4,352,476	-		PP_3825	0.44	+0.3
4,352,643	+				-0.8
4,352,643	+				-0.3
4,352,643	+				-1.3
4,352,644	-				-1.0
4,352,644	-				-1.6
4,352,644	-				+1.7
4,352,671	+		PP_5633	0.11	+3.3
4,352,672	-		PP_5633	0.11	-1.0
4,352,672	-		PP_5633	0.11	-1.5
4,352,672	-		PP_5633	0.11	-1.4
4,352,672	-		PP_5633	0.11	+0.0
4,352,683	+		PP_5633	0.18	-1.1
4,352,684	-		PP_5633	0.18	+1.2
4,352,821	+				-0.4
4,352,898	+				-0.7
4,353,167	-		PP_3827	0.27	+1.2
4,353,167	-		PP_3827	0.27	+1.9
4,353,169	+		PP_3827	0.27	+1.3
4,353,169	+		PP_3827	0.27	-2.1
4,353,169	+		PP_3827	0.27	-2.3
4,353,169	+		PP_3827	0.27	+0.0
4,353,170	-		PP_3827	0.27	+2.9
4,353,170	-		PP_3827	0.27	+2.5
4,353,321	-		PP_3827	0.41	-2.8
4,353,341	+		PP_3827	0.43	-0.3
4,353,342	-		PP_3827	0.43	-0.2
4,353,342	-		PP_3827	0.43	+1.6
4,353,418	+		PP_3827	0.50	+1.4
4,353,418	+		PP_3827	0.50	-0.1
4,353,474	-		PP_3827	0.55	-2.4
4,353,491	+		PP_3827	0.57	-1.3
4,353,491	+		PP_3827	0.57	-2.3
4,353,541	-		PP_3827	0.61	+1.5
4,353,610	+		PP_3827	0.68	+2.2
4,353,611	-		PP_3827	0.68	+3.2
4,353,809	+		PP_3827	0.86	-1.6
4,353,809	+		PP_3827	0.86	+1.7
4,353,809	+		PP_3827	0.86	-1.5
4,353,835	-		PP_3827	0.88	-1.8
4,353,835	-		PP_3827	0.88	-1.8
4,353,835	-		PP_3827	0.88	+1.5
4,353,842	-		PP_3827	0.89	+3.1
4,353,873	-				+1.8
4,353,924	+				-0.8
4,354,002	+				+0.2
4,354,004	+				-2.1
4,354,005	-				-2.4
4,354,008	+				-1.6
4,354,235	+		PP_3828	0.25	-3.0
4,354,235	+		PP_3828	0.25	-1.3
4,354,326	+		PP_3828	0.37	-1.7
4,354,326	+		PP_3828	0.37	-2.6
4,354,343	-		PP_3828	0.40	-0.9
4,354,346	+		PP_3828	0.40	-1.5
4,354,389	-		PP_3828	0.46	+0.3
4,354,392	+		PP_3828	0.46	+0.8
4,354,392	+		PP_3828	0.46	+0.4
4,354,393	-		PP_3828	0.46	-2.5
4,354,393	-		PP_3828	0.46	-2.8
4,354,393	-		PP_3828	0.46	+0.7
4,354,428	-		PP_3828	0.51	+0.6
4,354,428	-		PP_3828	0.51	+0.9
4,354,466	+		PP_3828	0.56	+0.4
4,354,488	+		PP_3828	0.59	-0.3
4,354,488	+		PP_3828	0.59	+0.2
4,354,488	+		PP_3828	0.59	+0.8
4,354,489	-		PP_3828	0.59	+0.8
4,354,489	-		PP_3828	0.59	-1.5
4,354,616	+		PP_3828	0.75	-1.2
4,354,617	-		PP_3828	0.76	+2.0
4,354,617	-		PP_3828	0.76	-2.8
4,354,633	-		PP_3828	0.78	-2.8
4,354,745	+				-2.5
4,354,784	+				-1.3
4,354,784	+				+0.1
4,354,784	+				-3.2
4,354,784	+				+0.3
4,354,784	-				-1.6
4,354,785	-				-1.6
4,354,790	+				+1.3
4,354,791	-				+1.5
4,354,844	+				+0.1