Strain Fitness in Pseudomonas putida KT2440 around PP_3765

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,294,745	-		PP_3764	0.52	+1.0
4,294,804	+		PP_3764	0.56	-2.9
4,294,804	+		PP_3764	0.56	+1.5
4,294,805	-		PP_3764	0.56	+0.0
4,294,903	+		PP_3764	0.64	-0.5
4,294,903	+		PP_3764	0.64	+1.0
4,294,904	-		PP_3764	0.64	+1.0
4,294,940	-		PP_3764	0.67	+0.3
4,294,940	-		PP_3764	0.67	-2.9
4,294,994	-		PP_3764	0.71	+0.0
4,295,126	+		PP_3764	0.81	-0.8
4,295,126	+		PP_3764	0.81	+0.3
4,295,126	+		PP_3764	0.81	+1.5
4,295,126	+				-0.6
4,295,126	+		PP_3764	0.81	-0.5
4,295,127	-		PP_3764	0.81	+2.4
4,295,128	+		PP_3764	0.81	-2.8
4,295,203	+		PP_3764	0.87	+1.4
4,295,204	-		PP_3764	0.87	+0.5
4,295,307	+				+0.9
4,295,308	-				-3.9
4,295,308	-				-1.2
4,295,308	-				-2.9
4,295,308	-				-2.0
4,295,390	+				+0.5
4,295,390	+				+0.0
4,295,391	-				-3.1
4,295,391	-				-0.6
4,295,502	+				-0.3
4,295,541	-				-0.6
4,295,573	-				-1.6
4,295,616	-				-2.9
4,295,706	+				-1.4
4,295,718	+				+1.1
4,295,719	-				-0.5
4,295,719	-				-1.3
4,295,719	-				-0.7
4,295,719	-				-0.6
4,295,719	-				+2.0
4,295,719	-				-0.9
4,295,719	-				-0.4
4,295,719	-				-1.3
4,295,840	+		PP_3765	0.33	-1.8
4,295,840	+		PP_3765	0.33	-0.4
4,295,860	+		PP_3765	0.38	-2.4
4,295,881	-		PP_3765	0.44	-0.5
4,295,968	+		PP_3765	0.68	-1.6
4,295,969	-		PP_3765	0.69	-1.4
4,295,969	-		PP_3765	0.69	-0.9
4,296,046	+				-2.5
4,296,047	-				+1.6
4,296,047	-				-2.0
4,296,047	-				-2.2
4,296,062	+				-1.3
4,296,095	+				-1.9
4,296,095	+				-1.5
4,296,095	+				-3.4
4,296,096	-				-3.0
4,296,096	-				+0.1
4,296,096	-				-0.3
4,296,131	-				+1.5
4,296,151	-				-0.3
4,296,244	+				+1.9
4,296,244	+				+1.4
4,296,245	-				+0.2
4,296,245	-				+0.3
4,296,429	+		PP_3766	0.23	-0.4
4,296,495	+		PP_3766	0.36	-2.8
4,296,495	+		PP_3766	0.36	+0.1
4,296,627	+		PP_3766	0.61	-0.5
4,296,831	+				-1.4
4,296,887	+				+0.1
4,296,887	+				-1.8
4,296,887	+				-0.1
4,296,887	+				+0.3
4,296,887	+				-0.2
4,296,888	-				-0.5
4,296,888	-				-0.1
4,296,888	-				-2.3
4,296,888	-				+1.4
4,296,889	+				-0.2
4,296,889	+				-1.5
4,296,889	+				+2.4
4,296,889	+				-0.9
4,296,889	+				+2.5
4,296,889	+				+1.3
4,296,890	-				-1.9
4,296,890	-				+1.0
4,296,890	-				+0.5
4,296,890	-				+1.7
4,296,890	-				+1.8
4,296,890	-				-1.2
4,296,890	-				+0.8
4,296,898	-				+0.3
4,296,910	+				-3.3
4,296,910	+				-1.3
4,296,910	+				-3.0
4,296,910	+				-0.2
4,296,910	+				+0.9
4,296,910	+				+4.0
4,296,910	+				-0.7
4,296,911	-				-0.2
4,296,924	-				-1.5
4,297,010	-		PP_3767	0.33	+0.4
4,297,059	+		PP_3767	0.53	-1.5
4,297,059	+		PP_3767	0.53	-2.3
4,297,059	+		PP_3767	0.53	-0.0
4,297,060	-		PP_3767	0.53	+1.4
4,297,060	-		PP_3767	0.53	+0.5
4,297,060	-		PP_3767	0.53	+2.2
4,297,060	-		PP_3767	0.53	+0.1