Strain Fitness in Pseudomonas putida KT2440 around PP_3710

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,231,372	+				+1.3
4,231,372	+				-0.8
4,231,373	-				-1.6
4,231,373	-				-0.7
4,231,373	-				-1.0
4,231,382	+				+0.8
4,231,425	+		PP_3709	0.12	-0.7
4,231,425	+		PP_3709	0.12	+0.9
4,231,425	+		PP_3709	0.12	-1.1
4,231,425	+		PP_3709	0.12	+0.4
4,231,425	+		PP_3709	0.12	-0.8
4,231,426	-		PP_3709	0.12	-1.2
4,231,461	-		PP_3709	0.22	+1.3
4,231,477	-		PP_3709	0.27	-0.5
4,231,623	+		PP_3709	0.67	+1.9
4,231,624	-		PP_3709	0.68	+0.9
4,231,690	+		PP_3709	0.86	+0.6
4,231,691	-		PP_3709	0.86	+3.6
4,231,699	+		PP_3709	0.88	-0.7
4,231,699	+		PP_3709	0.88	+1.8
4,231,700	-		PP_3709	0.89	+0.9
4,231,756	-				-2.3
4,231,856	+		PP_5625	0.11	+1.3
4,231,856	+		PP_5625	0.11	-0.0
4,231,938	+		PP_5625	0.39	-3.2
4,231,971	+		PP_5625	0.51	+1.1
4,231,972	-		PP_5625	0.51	-1.1
4,231,972	-		PP_5625	0.51	-2.8
4,232,116	-				-0.9
4,232,186	+				-0.4
4,232,207	-				-1.4
4,232,207	-				+1.8
4,232,241	+				+0.1
4,232,257	-				-0.9
4,232,270	+				+1.2
4,232,270	+				-0.4
4,232,270	+				+0.9
4,232,271	-				+1.5
4,232,271	-				-0.6
4,232,271	-				-1.1
4,232,271	-				+0.3
4,232,271	-				+2.0
4,232,279	+				+1.9
4,232,279	+				+1.3
4,232,279	+				-1.7
4,232,280	-				+0.1
4,232,280	-				+2.4
4,232,280	-				+0.9
4,232,281	+				-1.0
4,232,281	+				-0.5
4,232,281	+				-0.7
4,232,281	+				-1.1
4,232,282	-				+1.0
4,232,282	-				-0.1
4,232,282	-				-0.9
4,232,282	-				-1.9
4,232,317	+				+1.8
4,232,318	-				+1.4
4,232,423	+		PP_3710	0.20	+0.5
4,232,423	+		PP_3710	0.20	+0.1
4,232,423	+		PP_3710	0.20	-1.6
4,232,424	-		PP_3710	0.20	+0.1
4,232,424	-		PP_3710	0.20	-0.5
4,232,424	-		PP_3710	0.20	-0.8
4,232,443	-		PP_3710	0.24	+0.6
4,232,443	-		PP_3710	0.24	+1.0
4,232,497	+		PP_3710	0.36	+2.7
4,232,498	-		PP_3710	0.36	-2.1
4,232,498	-		PP_3710	0.36	-1.9
4,232,498	-		PP_3710	0.36	-2.5
4,232,524	-		PP_3710	0.42	-1.4
4,232,545	+		PP_3710	0.46	-1.7
4,232,631	+		PP_3710	0.65	-3.4
4,232,632	-		PP_3710	0.65	+0.3
4,232,668	-		PP_3710	0.73	-1.3
4,232,683	+		PP_3710	0.76	-2.3
4,232,684	-		PP_3710	0.76	+0.5
4,232,684	-		PP_3710	0.76	-2.4
4,232,684	-		PP_3710	0.76	+0.8
4,232,713	+		PP_3710	0.82	-0.7
4,232,713	+		PP_3710	0.82	+2.5
4,232,713	+		PP_3710	0.82	-1.6
4,232,714	-		PP_3710	0.83	-2.3
4,232,714	-		PP_3710	0.83	-0.7
4,232,714	-		PP_3710	0.83	-0.5
4,232,721	+		PP_3710	0.84	-0.1
4,232,721	+		PP_3710	0.84	+2.0
4,232,721	+		PP_3710	0.84	-1.0
4,232,722	-		PP_3710	0.84	-1.7
4,232,751	+				-2.5
4,232,834	+				+1.4
4,232,834	+				+1.1
4,232,849	+				+1.4
4,232,881	-				-0.7
4,232,881	-				+1.7
4,232,881	-				-0.0
4,232,903	-				-3.3
4,232,967	-		PP_5626	0.23	-1.5
4,232,978	-		PP_5626	0.25	+1.3
4,232,978	-		PP_5626	0.25	+0.4
4,232,981	+		PP_5626	0.26	+1.8
4,232,982	-		PP_5626	0.26	-0.9
4,233,044	+		PP_5626	0.39	-0.1
4,233,044	+		PP_5626	0.39	-0.2
4,233,045	-		PP_5626	0.40	+0.4
4,233,045	-		PP_5626	0.40	-2.3
4,233,045	-		PP_5626	0.40	-0.4
4,233,045	-		PP_5626	0.40	+1.0
4,233,045	-		PP_5626	0.40	-0.2
4,233,171	+		PP_5626	0.67	-0.1
4,233,172	-				+1.9
4,233,172	-		PP_5626	0.67	-0.5
4,233,172	-		PP_5626	0.67	-1.5
4,233,180	-		PP_5626	0.69	+1.6
4,233,289	+				-0.1
4,233,289	+				+0.4
4,233,289	+				-0.3
4,233,290	-				+0.6
4,233,290	-				-1.6
4,233,346	+				+2.1
4,233,347	-				+0.1
4,233,378	+				+0.7
4,233,379	-				+1.2
4,233,464	+				-1.4
4,233,464	+				-0.5
4,233,465	-				+1.5
4,233,465	-				+1.1
4,233,547	-				+1.3
4,233,547	-				-0.2
4,233,547	-				+1.4
4,233,547	-				-0.8
4,233,547	-				-0.8
4,233,663	-				+1.2
4,233,765	-		PP_3711	0.14	+1.4
4,233,765	-		PP_3711	0.14	+1.3
4,233,771	+		PP_3711	0.14	+0.7
4,233,780	+		PP_3711	0.15	-1.2
4,233,780	+		PP_3711	0.15	-1.1