Strain Fitness in Pseudomonas putida KT2440 around PP_3672

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,172,209	-				+1.6
4,172,227	+				+0.5
4,172,227	+				-2.1
4,172,227	+				-1.1
4,172,228	-				+1.0
4,172,228	-				+0.1
4,172,312	+				-1.2
4,172,353	+				-0.4
4,172,353	+				-1.0
4,172,354	-				-1.8
4,172,610	-		PP_3671	0.29	+0.4
4,172,731	+		PP_3671	0.44	-0.9
4,172,791	+		PP_3671	0.51	-0.0
4,172,847	+		PP_3671	0.58	+0.0
4,172,848	-		PP_3671	0.58	-1.0
4,172,848	-		PP_3671	0.58	+0.9
4,172,848	-		PP_3671	0.58	-1.2
4,172,916	+		PP_3671	0.67	+0.5
4,172,916	+		PP_3671	0.67	-0.6
4,172,917	-		PP_3671	0.67	-0.4
4,173,264	+		PP_3672	0.10	+0.4
4,173,264	+		PP_3672	0.10	-2.7
4,173,489	+		PP_3672	0.49	-1.5
4,173,653	-		PP_3672	0.78	-0.8
4,173,653	-		PP_3672	0.78	-2.7
4,173,826	-				-3.0
4,173,828	+				-2.0
4,173,842	-				+1.1
4,173,849	-				-1.9
4,173,850	+				+0.6
4,173,851	-				-0.5
4,173,897	+				+1.7
4,173,897	+				-1.4
4,173,898	-				+1.8
4,173,904	-				+2.6
4,173,904	-				+2.4
4,173,910	-				+2.5
4,173,923	+				-2.0
4,173,923	+				+0.8
4,173,923	+				+0.5
4,173,954	+				-2.2
4,173,955	-				-3.0
4,173,955	-				+1.5
4,174,014	+				+1.1
4,174,028	+				-0.9
4,174,036	+				+0.5
4,174,036	+				+1.0
4,174,036	+				+1.1
4,174,036	+				+1.4
4,174,036	+				+1.7
4,174,036	+				+1.5
4,174,036	+				+0.2
4,174,036	+				-0.6
4,174,037	-				+2.9
4,174,037	-				+1.1
4,174,068	+				-1.5
4,174,068	+				-1.7
4,174,068	+				-2.4
4,174,069	-				+0.7
4,174,069	-				+0.0
4,174,179	+				-0.6
4,174,179	+				+1.3
4,174,180	-				-1.8
4,174,287	+				-2.3
4,174,288	-				-0.9
4,174,288	-				-2.2
4,174,355	-				+1.6
4,174,359	-				-2.0
4,174,359	-				+1.1
4,174,600	+				-1.7
4,174,601	-				+1.6
4,174,601	-				-3.0
4,174,601	-				+1.0
4,174,602	+				+0.3
4,174,602	+				+0.5
4,174,603	-				-0.6
4,174,686	+				-2.4