Strain Fitness in Pseudomonas putida KT2440 around PP_3623

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,118,598	+		PP_3622	0.57	-1.4
4,118,666	+		PP_3622	0.60	-1.7
4,118,667	-		PP_3622	0.60	-1.3
4,118,702	-		PP_3622	0.62	-2.3
4,118,702	-		PP_3622	0.62	-1.4
4,118,702	-		PP_3622	0.62	+2.1
4,118,868	+		PP_3622	0.69	-0.9
4,118,868	+		PP_3622	0.69	+0.1
4,118,901	+		PP_3622	0.70	+0.3
4,118,902	-		PP_3622	0.71	+0.7
4,118,929	-		PP_3622	0.72	+3.2
4,118,945	+		PP_3622	0.72	+0.6
4,118,946	-		PP_3622	0.72	-0.0
4,118,946	-		PP_3622	0.72	+0.6
4,118,968	-		PP_3622	0.73	-2.5
4,119,343	-				+0.2
4,119,372	+				+0.9
4,119,372	+				-3.4
4,119,660	+				+0.9
4,119,660	+				-0.9
4,119,660	+				-1.5
4,119,661	-				-1.0
4,119,741	+		PP_3623	0.12	-0.0
4,119,741	+		PP_3623	0.12	-1.0
4,119,777	-		PP_3623	0.14	+0.7
4,119,777	-		PP_3623	0.14	-0.8
4,119,885	+		PP_3623	0.22	-1.5
4,119,885	+		PP_3623	0.22	-1.3
4,119,885	+		PP_3623	0.22	-0.9
4,119,886	-		PP_3623	0.22	-0.4
4,120,008	+		PP_3623	0.31	-2.3
4,120,180	-		PP_3623	0.44	+0.2
4,120,180	-		PP_3623	0.44	+1.3
4,120,182	-		PP_3623	0.44	-0.8
4,120,217	+		PP_3623	0.47	-2.4
4,120,302	+		PP_3623	0.53	+0.4
4,120,302	+		PP_3623	0.53	-2.7
4,120,303	-		PP_3623	0.53	-0.1
4,120,303	-		PP_3623	0.53	+0.4
4,120,303	-		PP_3623	0.53	+0.8
4,120,303	-		PP_3623	0.53	+0.9
4,120,303	-		PP_3623	0.53	-1.4
4,120,405	+		PP_3623	0.61	+0.2
4,120,405	+		PP_3623	0.61	-0.9
4,120,405	+		PP_3623	0.61	-0.5
4,120,405	+		PP_3623	0.61	-1.1
4,120,405	+		PP_3623	0.61	-2.6
4,120,405	+		PP_3623	0.61	-1.4
4,120,406	-		PP_3623	0.61	-0.6
4,120,406	-		PP_3623	0.61	+1.5
4,120,406	-		PP_3623	0.61	-0.1
4,120,406	-		PP_3623	0.61	+0.3
4,120,407	+		PP_3623	0.61	-2.2
4,120,407	+		PP_3623	0.61	+2.4
4,120,407	+		PP_3623	0.61	-1.6
4,120,407	+		PP_3623	0.61	-1.9
4,120,408	-		PP_3623	0.61	-2.5
4,120,408	-		PP_3623	0.61	+1.1
4,120,408	-		PP_3623	0.61	-3.8
4,120,584	+		PP_3623	0.74	-2.8
4,120,585	-		PP_3623	0.74	+1.1
4,120,585	-		PP_3623	0.74	+1.0
4,120,701	-		PP_3623	0.83	-1.1
4,120,701	-		PP_3623	0.83	-1.7
4,120,701	-		PP_3623	0.83	-0.9
4,120,821	-				-1.4
4,120,865	-				+0.6
4,120,907	+				+0.7
4,120,907	+				+0.4
4,120,908	-				+0.2
4,120,919	+				-1.7
4,120,919	+				+0.6
4,120,919	+				-2.6
4,120,920	-				-0.2
4,120,945	+				-2.7
4,120,945	+				+0.0
4,120,946	-				+0.1
4,120,946	-				+1.7
4,121,131	+		PP_3624	0.17	+0.1
4,121,131	+		PP_3624	0.17	+0.7
4,121,131	+				-1.5
4,121,131	+		PP_3624	0.17	-1.2
4,121,131	+		PP_3624	0.17	-0.0
4,121,215	+		PP_3624	0.28	+0.4
4,121,216	-		PP_3624	0.28	-0.6
4,121,224	+		PP_3624	0.29	-2.7
4,121,225	-				+1.3
4,121,225	-		PP_3624	0.29	-1.1
4,121,225	-		PP_3624	0.29	+1.0
4,121,233	+		PP_3624	0.30	-1.4
4,121,233	+				+0.6
4,121,315	-		PP_3624	0.40	-0.4
4,121,340	-		PP_3624	0.43	-1.8
4,121,392	+				+3.5
4,121,561	-		PP_3624	0.71	+1.4
4,121,571	+		PP_3624	0.73	+2.0
4,121,571	+		PP_3624	0.73	+2.9
4,121,572	-		PP_3624	0.73	+0.7
4,121,572	-		PP_3624	0.73	+0.4
4,121,572	-		PP_3624	0.73	+0.6
4,121,572	-		PP_3624	0.73	+2.1
4,121,572	-		PP_3624	0.73	-0.7
4,121,572	-		PP_3624	0.73	-2.8
4,121,572	-		PP_3624	0.73	-1.7
4,121,662	+		PP_3624	0.84	+1.7
4,121,663	-		PP_3624	0.84	+2.0
4,121,672	-		PP_3624	0.85	+0.6
4,121,788	+				+1.8
4,121,788	+				+1.4
4,121,788	+				-0.9
4,121,789	-				-0.2
4,121,789	-				-0.8
4,121,789	-				-0.4
4,121,789	-				-0.9
4,121,789	-				-3.8
4,121,826	+				+1.5
4,121,826	+				+1.5
4,121,867	-				-0.1
4,121,867	-				-1.0
4,121,867	-				-0.5
4,121,882	+				-3.2
4,121,883	-				-3.6