Strain Fitness in Pseudomonas putida KT2440 around PP_3606

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
4,096,721	+				+3.1
4,096,729	+				+0.8
4,096,729	+				-2.6
4,096,729	+				+1.0
4,096,729	+				-0.7
4,096,730	-				-0.7
4,096,730	-				+1.7
4,096,730	-				+0.3
4,096,730	-				+1.6
4,096,734	-				-0.5
4,096,855	+		PP_3605	0.11	-1.4
4,096,855	+		PP_3605	0.11	-1.0
4,096,856	-		PP_3605	0.11	-2.4
4,096,856	-		PP_3605	0.11	-1.3
4,097,092	-		PP_3605	0.37	+0.9
4,097,149	+		PP_3605	0.43	-0.7
4,097,149	+		PP_3605	0.43	+0.0
4,097,192	+		PP_3605	0.47	+0.8
4,097,282	-		PP_3605	0.57	-1.7
4,097,309	-		PP_3605	0.60	+0.9
4,097,316	+		PP_3605	0.61	-2.6
4,097,542	-		PP_3605	0.85	-0.3
4,097,570	+		PP_3605	0.88	-1.0
4,097,571	-		PP_3605	0.89	+0.8
4,097,571	-		PP_3605	0.89	-1.6
4,097,571	-		PP_3605	0.89	-1.8
4,097,571	-		PP_3605	0.89	+2.2
4,097,571	-		PP_3605	0.89	-0.3
4,097,571	-		PP_3605	0.89	-0.2
4,097,620	+				-2.5
4,097,620	+				-0.4
4,097,620	+				-0.9
4,097,620	+				-0.9
4,097,620	+				-2.5
4,097,621	-				+1.7
4,097,621	-				-0.7
4,097,621	-				-0.7
4,097,621	-				-2.9
4,097,669	+				-0.9
4,097,669	+				+0.6
4,097,670	-				-1.0
4,097,823	-		PP_3606	0.11	+0.9
4,097,866	+		PP_3606	0.15	+0.1
4,097,985	+		PP_3606	0.28	+1.7
4,097,986	-		PP_3606	0.28	+1.8
4,098,052	+		PP_3606	0.35	+0.5
4,098,057	+		PP_3606	0.35	-1.0
4,098,057	+		PP_3606	0.35	+0.8
4,098,178	-		PP_3606	0.47	-2.2
4,098,186	+		PP_3606	0.48	-1.7
4,098,187	-		PP_3606	0.48	+1.6
4,098,253	+		PP_3606	0.55	+0.7
4,098,253	+		PP_3606	0.55	+1.1
4,098,254	-		PP_3606	0.55	+1.6
4,098,287	-		PP_3606	0.59	+0.4
4,098,287	-		PP_3606	0.59	+0.0
4,098,304	+		PP_3606	0.60	+2.3
4,098,304	+		PP_3606	0.60	-3.7
4,098,304	+		PP_3606	0.60	+0.0
4,098,305	-		PP_3606	0.61	+1.1
4,098,305	-		PP_3606	0.61	-0.4
4,098,305	-		PP_3606	0.61	+1.7
4,098,305	-		PP_3606	0.61	+1.0
4,098,409	+		PP_3606	0.71	-0.5
4,098,409	+		PP_3606	0.71	-0.4
4,098,409	+		PP_3606	0.71	+0.4
4,098,409	+		PP_3606	0.71	-1.9
4,098,410	-		PP_3606	0.71	-2.8
4,098,410	-		PP_3606	0.71	+1.8
4,098,410	-		PP_3606	0.71	-1.2
4,098,627	+				+0.6
4,098,627	+				+0.1
4,098,628	-				+0.5
4,098,665	+				+1.0
4,098,666	-				+1.5
4,098,823	+				+1.1
4,098,823	+				+1.1
4,098,824	-				+0.5
4,098,870	-				-1.0
4,098,885	+				+1.8
4,098,914	+				-1.6
4,098,914	+				-1.9
4,098,914	+				-1.4
4,098,914	+				+0.8
4,098,914	+				+0.0
4,098,914	+				-0.5
4,098,915	-				+2.4
4,098,915	-				-0.5
4,098,915	-				+1.4
4,098,915	-				+1.2
4,098,915	-				+0.2
4,098,915	-				-1.0
4,098,915	-				-0.1
4,098,915	-				+1.2
4,098,915	-				+0.9
4,098,915	-				+2.1
4,098,919	+				+0.9
4,098,920	-				+0.9
4,098,942	+		PP_3607	0.11	-0.0
4,098,943	-		PP_3607	0.12	-0.6
4,098,943	-		PP_3607	0.12	+0.0
4,098,943	-		PP_3607	0.12	+1.6
4,098,943	-		PP_3607	0.12	-0.7
4,098,964	-		PP_3607	0.13	-2.4
4,098,981	+		PP_3607	0.15	-0.2
4,099,088	+		PP_3607	0.23	+1.2
4,099,106	+		PP_3607	0.25	+1.2
4,099,240	+		PP_3607	0.36	+1.4
4,099,240	+		PP_3607	0.36	-0.4
4,099,241	-		PP_3607	0.36	-0.4
4,099,278	+		PP_3607	0.39	+1.0
4,099,588	+		PP_3607	0.65	-3.0