Strain Fitness in Pseudomonas putida KT2440 around PP_3329

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,765,707	+				-2.2
3,765,708	-				+1.3
3,765,708	-				+0.5
3,765,774	+		PP_5599	0.12	-0.6
3,765,776	+		PP_5599	0.12	-1.7
3,765,776	+		PP_5599	0.12	-2.9
3,765,777	-		PP_5599	0.12	+1.5
3,765,777	-		PP_5599	0.12	+1.6
3,765,937	+		PP_5599	0.31	+0.9
3,765,960	+		PP_5599	0.33	-3.1
3,765,960	+		PP_5599	0.33	+0.8
3,765,978	-		PP_5599	0.35	+0.3
3,766,028	+		PP_5599	0.41	+3.6
3,766,070	+		PP_5599	0.46	+0.6
3,766,071	-		PP_5599	0.46	-1.0
3,766,103	+		PP_5599	0.50	-1.5
3,766,103	+		PP_5599	0.50	+2.3
3,766,103	+		PP_5599	0.50	-0.0
3,766,104	-		PP_5599	0.50	+2.6
3,766,104	-		PP_5599	0.50	+0.1
3,766,104	-		PP_5599	0.50	-0.0
3,766,137	+		PP_5599	0.53	-0.5
3,766,137	+		PP_5599	0.53	+1.2
3,766,137	+		PP_5599	0.53	+1.5
3,766,137	+		PP_5599	0.53	-2.9
3,766,138	-		PP_5599	0.54	-1.9
3,766,138	-		PP_5599	0.54	+0.7
3,766,139	+		PP_5599	0.54	+1.0
3,766,238	-		PP_5599	0.65	-3.2
3,766,277	-		PP_5599	0.70	-1.0
3,766,277	-		PP_5599	0.70	-1.6
3,766,314	+		PP_5599	0.74	-1.3
3,766,335	+		PP_5599	0.76	+0.0
3,766,335	+		PP_5599	0.76	-2.4
3,766,335	+		PP_5599	0.76	+2.6
3,766,335	+		PP_5599	0.76	-1.8
3,766,336	-		PP_5599	0.76	-0.2
3,766,339	+		PP_5599	0.77	+2.2
3,766,339	+		PP_5599	0.77	-1.2
3,766,339	+		PP_5599	0.77	+0.4
3,766,339	+		PP_5599	0.77	+2.7
3,766,339	+				+1.7
3,766,339	+		PP_5599	0.77	-2.8
3,766,339	+		PP_5599	0.77	-0.9
3,766,339	+		PP_5599	0.77	-0.5
3,766,340	-		PP_5599	0.77	+0.6
3,766,340	-		PP_5599	0.77	-0.5
3,766,340	-		PP_5599	0.77	-2.8
3,766,340	-		PP_5599	0.77	-0.3
3,766,340	-		PP_5599	0.77	+0.2
3,766,340	-		PP_5599	0.77	+0.8
3,766,409	+		PP_5599	0.85	-0.9
3,766,409	+		PP_5599	0.85	+0.9
3,766,410	-		PP_5599	0.85	-1.3
3,766,441	+		PP_5599	0.88	+0.7
3,766,441	+		PP_5599	0.88	+0.4
3,766,441	+		PP_5599	0.88	-0.6
3,766,441	+		PP_5599	0.88	+0.5
3,766,442	-		PP_5599	0.88	+1.7
3,766,455	-				+1.7
3,766,511	+				+0.8
3,766,511	+				+2.4
3,766,518	+				-1.7
3,766,518	+				+0.2
3,766,518	+				-1.4
3,766,519	-				+0.2
3,766,519	-				+1.0
3,766,519	-				-1.0
3,766,519	-				+0.0
3,766,519	-				+1.2
3,766,519	-				+0.1
3,766,548	+				+2.0
3,766,548	+				+0.1
3,766,548	+				-0.5
3,766,548	+				+0.8
3,766,548	+				-0.8
3,766,548	+				+0.3
3,766,578	+				+3.3
3,766,579	-				-2.3
3,766,579	-				+0.1
3,766,717	+		PP_3329	0.12	-0.2
3,766,717	+		PP_3329	0.12	-0.8
3,766,743	+		PP_3329	0.14	-0.6
3,766,743	+		PP_3329	0.14	+1.0
3,766,743	+		PP_3329	0.14	-0.7
3,766,744	-		PP_3329	0.14	-0.4
3,766,744	-		PP_3329	0.14	+1.2
3,766,795	+		PP_3329	0.18	+1.9
3,766,795	+		PP_3329	0.18	-2.1
3,766,796	-		PP_3329	0.18	+0.0
3,766,811	+		PP_3329	0.19	-1.7
3,766,811	+		PP_3329	0.19	-2.3
3,766,833	+		PP_3329	0.21	-2.1
3,766,953	-		PP_3329	0.30	-0.3
3,766,957	+		PP_3329	0.30	-1.7
3,766,971	+		PP_3329	0.31	-3.7
3,766,972	-		PP_3329	0.31	-3.1
3,766,972	-		PP_3329	0.31	-1.6
3,767,016	-		PP_3329	0.35	+1.3
3,767,053	-		PP_3329	0.38	-0.0
3,767,207	+		PP_3329	0.50	-2.4
3,767,207	+		PP_3329	0.50	-0.8
3,767,211	+		PP_3329	0.50	-1.9
3,767,211	+		PP_3329	0.50	+1.1
3,767,211	+		PP_3329	0.50	-3.1
3,767,212	-		PP_3329	0.50	-0.1
3,767,212	-		PP_3329	0.50	+0.6
3,767,212	-		PP_3329	0.50	-1.7
3,767,212	-		PP_3329	0.50	-1.5
3,767,212	-		PP_3329	0.50	-0.5
3,767,212	-		PP_3329	0.50	+0.6
3,767,298	+		PP_3329	0.57	+1.7
3,767,298	+		PP_3329	0.57	-2.8
3,767,298	+		PP_3329	0.57	+1.7
3,767,299	-		PP_3329	0.57	-2.8
3,767,299	-		PP_3329	0.57	+0.7
3,767,299	-		PP_3329	0.57	-1.4
3,767,299	-		PP_3329	0.57	-3.2
3,767,299	-		PP_3329	0.57	-1.3
3,767,299	-		PP_3329	0.57	+0.3
3,767,299	-		PP_3329	0.57	-2.1
3,767,308	+		PP_3329	0.57	+1.0
3,767,309	-		PP_3329	0.57	+1.2
3,767,484	+		PP_3329	0.71	-0.1
3,767,485	-		PP_3329	0.71	-2.9
3,767,597	+		PP_3329	0.80	+1.1
3,767,598	-		PP_3329	0.80	-2.2
3,767,598	-		PP_3329	0.80	-1.9
3,767,598	-		PP_3329	0.80	+0.5
3,767,598	-		PP_3329	0.80	+0.1
3,767,598	-		PP_3329	0.80	+0.4
3,767,598	-		PP_3329	0.80	-0.2
3,767,598	-		PP_3329	0.80	+0.2
3,767,797	-				-0.2
3,767,855	+				+1.1
3,767,929	+				-1.2
3,767,929	+				-2.3
3,767,929	+				-2.7
3,767,930	-				+0.2
3,767,930	-				+0.6
3,767,930	-				-1.5
3,768,031	+		PP_5600	0.12	-2.8
3,768,105	+		PP_5600	0.31	+1.0
3,768,287	+		PP_5600	0.77	-0.3
3,768,756	+		PP_3330	0.16	-0.4
3,768,757	-		PP_3330	0.16	+1.3