Strain Fitness in Pseudomonas putida KT2440 around PP_3259

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,691,691	+		PP_3257	0.79	+0.7
3,691,692	-		PP_3257	0.79	-1.7
3,691,692	-		PP_3257	0.79	-1.9
3,691,742	+		PP_3257	0.87	+0.0
3,691,784	+				+0.0
3,691,786	+				-1.9
3,691,786	+				+1.8
3,691,787	-				-0.2
3,691,787	-				-3.1
3,691,787	-				-2.8
3,691,787	-				-0.9
3,691,800	-				-1.4
3,692,046	+		PP_3258	0.29	+2.2
3,692,461	-		PP_3258	0.83	-1.5
3,692,461	-		PP_3258	0.83	+0.8
3,692,585	+				-0.2
3,692,585	+				+0.8
3,692,585	+				-1.0
3,692,586	-				+1.8
3,692,586	-				+2.5
3,692,586	-				-0.9
3,692,586	-				+1.9
3,692,586	-				-0.0
3,692,750	+		PP_3259	0.16	-2.9
3,692,750	+		PP_3259	0.16	+1.2
3,692,750	+		PP_3259	0.16	+0.1
3,692,751	-		PP_3259	0.16	+0.4
3,692,774	+		PP_3259	0.18	+2.7
3,693,031	-		PP_3259	0.43	+3.4
3,693,065	-		PP_3259	0.46	+0.2
3,693,199	+		PP_3259	0.59	+1.0
3,693,200	-		PP_3259	0.59	+0.7
3,693,399	+		PP_3259	0.78	-0.1
3,693,400	-		PP_3259	0.78	-0.4
3,693,400	-		PP_3259	0.78	-2.6
3,693,554	+				+1.0
3,693,555	-				-2.3
3,693,578	+				+0.7
3,693,678	+				-1.3
3,693,714	+				-2.0
3,693,714	+				-2.1
3,693,715	-				+1.8
3,693,824	+				-2.6
3,693,824	+				+1.7
3,693,825	-				-1.7
3,693,828	+				+0.2
3,693,829	-				-1.7
3,693,834	+				+0.4
3,693,834	+				-0.0
3,693,865	+				-3.4
3,693,882	-				-3.4
3,693,904	+				+1.3
3,693,905	-				+3.1
3,693,983	-		PP_3260	0.13	-1.7
3,694,058	+		PP_3260	0.16	-2.2
3,694,059	-		PP_3260	0.16	-1.7
3,694,321	+		PP_3260	0.26	+0.2
3,694,329	+		PP_3260	0.26	+1.0
3,694,329	+		PP_3260	0.26	-1.0
3,694,338	+		PP_3260	0.27	+0.1
3,694,338	+		PP_3260	0.27	-0.1
3,694,338	+		PP_3260	0.27	+0.6
3,694,338	+		PP_3260	0.27	-1.4
3,694,339	-		PP_3260	0.27	+2.0
3,694,339	-		PP_3260	0.27	+0.3
3,694,342	+		PP_3260	0.27	-1.0
3,694,342	+		PP_3260	0.27	+0.7
3,694,343	-		PP_3260	0.27	-0.5
3,694,343	-		PP_3260	0.27	+1.1
3,694,343	-		PP_3260	0.27	-0.5
3,694,343	-		PP_3260	0.27	+1.2
3,694,343	-		PP_3260	0.27	+1.2
3,694,343	-		PP_3260	0.27	-0.7
3,694,459	+		PP_3260	0.32	-1.5
3,694,459	+		PP_3260	0.32	+0.5
3,694,460	-		PP_3260	0.32	+0.8
3,694,460	-		PP_3260	0.32	+0.1
3,694,578	+		PP_3260	0.36	-0.1
3,694,579	-		PP_3260	0.36	-0.3