Strain Fitness in Pseudomonas putida KT2440 around PP_3250

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,682,716	+				-0.7
3,682,792	+				+1.3
3,682,792	+				-0.6
3,682,792	+				+0.2
3,682,792	+				+0.7
3,682,792	+				+1.5
3,682,792	+				+1.9
3,682,792	+				+0.6
3,682,792	+				+1.1
3,682,792	+				-0.4
3,682,793	-				+0.7
3,682,793	-				+0.0
3,682,793	-				-1.7
3,682,793	-				-1.8
3,682,793	-				-0.3
3,682,793	-				-1.6
3,682,812	-				-0.8
3,682,978	+		PP_3249	0.21	-0.8
3,682,978	+		PP_3249	0.21	+1.6
3,683,050	+				-0.4
3,683,050	+		PP_3249	0.29	-0.5
3,683,051	-		PP_3249	0.29	-1.0
3,683,051	-		PP_3249	0.29	-1.7
3,683,287	+		PP_3249	0.55	+1.3
3,683,287	+		PP_3249	0.55	+1.4
3,683,288	-		PP_3249	0.55	-1.0
3,683,288	-				+0.1
3,683,288	-		PP_3249	0.55	-0.3
3,683,305	+		PP_3249	0.57	-1.0
3,683,305	+		PP_3249	0.57	-1.0
3,683,305	+		PP_3249	0.57	-1.4
3,683,377	+		PP_3249	0.64	+1.3
3,683,377	+		PP_3249	0.64	+0.7
3,683,378	-		PP_3249	0.65	+0.3
3,683,378	-		PP_3249	0.65	+1.7
3,683,378	-		PP_3249	0.65	-0.7
3,683,602	-		PP_3249	0.89	+0.1
3,683,792	+				+0.6
3,683,792	+				-0.5
3,683,792	+				+1.6
3,683,793	-				-2.3
3,683,811	-				-1.4
3,683,811	-				-0.3
3,683,957	-		PP_3250	0.20	+1.0
3,683,972	+		PP_3250	0.21	-0.0
3,683,972	+		PP_3250	0.21	-1.1
3,683,973	-		PP_3250	0.21	-1.4
3,684,056	+		PP_3250	0.27	+0.9
3,684,056	+		PP_3250	0.27	+0.1
3,684,057	-		PP_3250	0.27	-1.0
3,684,057	-		PP_3250	0.27	-1.2
3,684,057	-		PP_3250	0.27	-0.5
3,684,057	-		PP_3250	0.27	-0.5
3,684,058	+		PP_3250	0.27	+1.8
3,684,059	-		PP_3250	0.28	-0.6
3,684,059	-		PP_3250	0.28	-1.1
3,684,250	-		PP_3250	0.42	+0.2
3,684,274	+		PP_3250	0.44	-1.3
3,684,390	+		PP_3250	0.53	-0.9
3,684,411	+		PP_3250	0.55	+0.2
3,684,462	-		PP_3250	0.59	-2.5
3,684,478	+		PP_3250	0.60	+3.8
3,684,478	+		PP_3250	0.60	-0.6
3,684,479	-		PP_3250	0.60	-0.2
3,684,479	-		PP_3250	0.60	-0.3
3,684,639	+		PP_3250	0.73	+1.9
3,684,725	+		PP_3250	0.79	-2.3
3,684,726	-		PP_3250	0.80	-3.1
3,684,819	-		PP_3250	0.87	-1.6
3,685,003	-				+0.6
3,685,018	-				+2.5
3,685,022	-				-2.6
3,685,046	+				-0.8
3,685,090	-				-1.0
3,685,120	-				+1.3
3,685,120	-				-0.1
3,685,145	-				+1.0
3,685,145	-				+0.1
3,685,316	+				+0.3
3,685,317	-				-0.4
3,685,478	+		PP_5594	0.51	+1.9
3,685,479	-		PP_5594	0.52	-0.5
3,685,592	+				-1.7
3,685,613	+				-1.9
3,685,613	+				-2.2
3,685,665	+				-1.4
3,685,665	+				+1.1
3,685,796	+		PP_3251	0.15	-1.0
3,685,797	-		PP_3251	0.15	-1.1
3,685,850	+		PP_3251	0.19	+1.7
3,685,851	-		PP_3251	0.19	-3.0
3,685,851	-		PP_3251	0.19	-0.2
3,685,914	-		PP_3251	0.24	+1.0
3,685,939	+		PP_3251	0.26	+0.6