Strain Fitness in Pseudomonas putida KT2440 around PP_3248

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,680,853	-		PP_3247	0.11	+0.8
3,680,853	-		PP_3247	0.11	-0.6
3,680,931	+		PP_3247	0.19	+0.7
3,680,950	-		PP_3247	0.21	+0.2
3,681,062	+		PP_3247	0.34	+1.1
3,681,063	-				-0.7
3,681,658	+				+0.9
3,681,659	-				-1.1
3,681,686	+				+1.0
3,681,687	-				-1.8
3,681,687	-				-1.9
3,681,704	+				-0.2
3,681,704	+				-0.1
3,681,705	-				-1.5
3,681,708	+				+0.8
3,681,709	-				-0.5
3,681,709	-				-0.3
3,681,802	+				+0.1
3,681,803	-				-1.8
3,681,821	+				-3.3
3,681,822	-				-0.1
3,681,836	-				-2.0
3,681,836	-				-2.7
3,681,981	+		PP_3248	0.17	-0.6
3,681,982	-		PP_3248	0.17	-1.5
3,682,018	-		PP_3248	0.21	-2.0
3,682,018	-		PP_3248	0.21	-3.3
3,682,331	+		PP_3248	0.57	-1.0
3,682,331	+		PP_3248	0.57	+1.1
3,682,331	+		PP_3248	0.57	+1.0
3,682,332	-		PP_3248	0.57	-2.1
3,682,332	-		PP_3248	0.57	-0.9
3,682,637	+				+0.2
3,682,637	+				+0.7
3,682,641	-				-0.9
3,682,677	+				-1.5
3,682,677	+				+1.2
3,682,677	+				+0.0
3,682,678	-				-1.7
3,682,678	-				-0.5
3,682,716	+				-0.7
3,682,792	+				+1.3
3,682,792	+				-0.6
3,682,792	+				+0.2
3,682,792	+				+0.7
3,682,792	+				+1.5
3,682,792	+				+1.9
3,682,792	+				+0.6
3,682,792	+				+1.1
3,682,792	+				-0.4
3,682,793	-				+0.7
3,682,793	-				+0.0
3,682,793	-				-1.7
3,682,793	-				-1.8
3,682,793	-				-0.3
3,682,793	-				-1.6
3,682,812	-				-0.8
3,682,978	+		PP_3249	0.21	-0.8
3,682,978	+		PP_3249	0.21	+1.6
3,683,050	+				-0.4
3,683,050	+		PP_3249	0.29	-0.5
3,683,051	-		PP_3249	0.29	-1.0
3,683,051	-		PP_3249	0.29	-1.7
3,683,287	+		PP_3249	0.55	+1.3
3,683,287	+		PP_3249	0.55	+1.4
3,683,288	-		PP_3249	0.55	-1.0
3,683,288	-				+0.1
3,683,288	-		PP_3249	0.55	-0.3
3,683,305	+		PP_3249	0.57	-1.0
3,683,305	+		PP_3249	0.57	-1.0
3,683,305	+		PP_3249	0.57	-1.4
3,683,377	+		PP_3249	0.64	+1.3
3,683,377	+		PP_3249	0.64	+0.7
3,683,378	-		PP_3249	0.65	+0.3
3,683,378	-		PP_3249	0.65	+1.7
3,683,378	-		PP_3249	0.65	-0.7
3,683,602	-		PP_3249	0.89	+0.1