Strain Fitness in Pseudomonas putida KT2440 around PP_3223

Experiment: Tetrahymena sp., Mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-2
3,657,283	+				+0.7
3,657,284	-				-1.2
3,657,284	-				-0.8
3,657,345	+				-1.8
3,657,345	+				+1.5
3,657,419	+		PP_3222	0.13	+1.1
3,657,491	+		PP_3222	0.20	-2.4
3,657,492	-		PP_3222	0.20	+1.4
3,657,509	-		PP_3222	0.22	+0.7
3,657,509	-		PP_3222	0.22	+1.3
3,657,621	+		PP_3222	0.34	-1.0
3,657,621	+		PP_3222	0.34	-0.2
3,657,621	+		PP_3222	0.34	-0.4
3,657,622	-		PP_3222	0.34	-0.4
3,657,622	-		PP_3222	0.34	-1.1
3,657,622	-		PP_3222	0.34	-1.1
3,657,622	-				+0.7
3,657,622	-		PP_3222	0.34	+4.1
3,657,622	-		PP_3222	0.34	+1.2
3,657,670	-		PP_3222	0.39	-1.1
3,657,670	-		PP_3222	0.39	+2.2
3,658,038	+		PP_3222	0.78	+0.9
3,658,039	-		PP_3222	0.78	+2.3
3,658,039	-				+2.0
3,658,069	-				+1.2
3,658,069	-		PP_3222	0.81	-2.6
3,658,071	+		PP_3222	0.81	+1.3
3,658,072	-		PP_3222	0.81	-0.0
3,658,072	-		PP_3222	0.81	-0.2
3,658,179	+				+0.7
3,658,180	-				-0.0
3,658,180	-				+0.4
3,658,180	-				-2.1
3,658,180	-				+1.1
3,658,189	+				-2.2
3,658,189	+				-0.1
3,658,189	+				+1.9
3,658,189	+				-1.3
3,658,189	+				+0.3
3,658,190	-				+2.1
3,658,190	-				+0.5
3,658,190	-				+0.9
3,658,190	-				-1.7
3,658,190	-				-1.3
3,658,191	+				+1.9
3,658,191	+				+1.0
3,658,191	+				-0.2
3,658,191	+				-0.3
3,658,192	-				+1.8
3,658,192	-				+2.4
3,658,192	-				+0.3
3,658,401	-				-1.5
3,658,401	-				-0.2
3,658,568	+		PP_3223	0.20	-0.6
3,658,568	+		PP_3223	0.20	+1.5
3,658,568	+		PP_3223	0.20	+1.7
3,658,569	-		PP_3223	0.20	+1.8
3,658,569	-		PP_3223	0.20	-1.6
3,658,586	+		PP_3223	0.21	+0.2
3,658,675	+		PP_3223	0.26	-0.6
3,658,676	-		PP_3223	0.27	-1.1
3,658,863	-		PP_3223	0.38	+0.8
3,658,863	-		PP_3223	0.38	+0.6
3,658,864	+		PP_3223	0.38	-2.0
3,658,864	+		PP_3223	0.38	+0.8
3,658,865	-		PP_3223	0.38	+0.9
3,658,895	+		PP_3223	0.40	-1.1
3,658,895	+		PP_3223	0.40	-1.2
3,658,896	-		PP_3223	0.40	-0.3
3,658,991	+		PP_3223	0.46	+1.6
3,659,150	+		PP_3223	0.56	+0.4
3,659,151	-		PP_3223	0.56	-2.6
3,659,175	-		PP_3223	0.57	-0.3
3,659,175	-		PP_3223	0.57	+0.5
3,659,259	-		PP_3223	0.63	-2.1
3,659,259	-		PP_3223	0.63	+1.8
3,659,456	+		PP_3223	0.75	-0.4
3,659,457	-		PP_3223	0.75	+1.5
3,659,583	+		PP_3223	0.83	+0.4
3,659,583	+		PP_3223	0.83	-0.4
3,659,583	+		PP_3223	0.83	+1.6
3,659,583	+		PP_3223	0.83	-1.2
3,659,584	-		PP_3223	0.83	+3.0
3,659,584	-		PP_3223	0.83	-0.9
3,659,585	+		PP_3223	0.83	+0.1
3,659,585	+		PP_3223	0.83	-2.2
3,659,585	+		PP_3223	0.83	+0.2
3,659,586	-		PP_3223	0.83	+1.7
3,659,586	-		PP_3223	0.83	+1.6
3,659,712	-				+0.7
3,660,005	+				-0.4
3,660,078	+		PP_3224	0.17	-0.1
3,660,078	+		PP_3224	0.17	+0.2
3,660,079	-		PP_3224	0.17	-0.2
3,660,079	-		PP_3224	0.17	+1.8
3,660,079	-		PP_3224	0.17	-0.6
3,660,079	-		PP_3224	0.17	+1.1
3,660,079	-		PP_3224	0.17	+1.2
3,660,278	-		PP_3224	0.43	+0.6
3,660,286	+		PP_3224	0.44	+1.4
3,660,287	-		PP_3224	0.44	-0.8
3,660,301	+		PP_3224	0.45	-2.1
3,660,304	+		PP_3224	0.46	+0.3
3,660,304	+		PP_3224	0.46	-2.7
3,660,305	-		PP_3224	0.46	-2.1
3,660,436	+		PP_3224	0.62	+1.2
3,660,598	+		PP_3224	0.83	+0.9
3,660,599	-		PP_3224	0.83	+1.9
3,660,599	-		PP_3224	0.83	-1.9
3,660,599	-		PP_3224	0.83	+0.5
3,660,599	-		PP_3224	0.83	+1.3
3,660,637	+		PP_3224	0.88	-0.8